BAC Information

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BAC

Clone NameMSMg01-063L12
Chromosome12 (Build37)
Map Location 64,433,247 - 64,433,690
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
Downstream geneLOC435302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063L12.T7 (MSMg01no063_l12.b1)MSMg01-063L12.TJ (MSMg01no063_l12.g1)
ACCAG289385AG289386
length775786
length of high quality
(start - end)
458 (117 - 574)320 (137 - 456)
definitionCHROMAT_FILE: MSMg01no063_l12.b1 PHD_FILE: MSMg01no063_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:11 2005CHROMAT_FILE: MSMg01no063_l12.g1 PHD_FILE: MSMg01no063_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNCCCCCCNNCCT
NNNNCCCCCCACCCCNNTCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCGCGGAATTCCTTAAATTTCCATAAATTCAGTTT
ATTTATTTATTTCAGAAAAATATCTAGTGATTATGTGTATACACGTTAAT
ATTTATTATACATTTAGAGGTTTGACATATTGAGTGATATCTTACGATAT
TTAAGTTGAGATGCAAACTAATGATCAACCTCGTATTTCCAAATCTTAGT
GTGCAAAGACAGAAGTGATGTATAGAAGCAAATATTTTAAAATATTTAAT
AGGTAGGAGAATAAGTCACCAGACTGTAAACAGAAAAACTAAACAAACTA
AAATATTTCACTTCAGCTAAACATTATTTTCAACCATCAAAGGCTTGCAA
AGAAACCTAAGATATTTGGAGATCAATGTTATAAAATATTTATAGAAGAG
AAGCATATCTCAACTCAGAAGTTGCAATCTTAAGGAGCTTACGTTATATA
TATATATATATATGCCAGTTTCCTAAATTTGCAAACCAAATGAAGACTAT
AACTACAAAATTAAATTCCTGGAACAGGCTTTGTGCATAATATTCTTAAC
GAAAGTGAAATTATTGGCTTTGTAGACATTCTTGGCTAAAGTTATGTAAC
AATCTAGATTCTATTGAACAATGCTTTTCCCACAGCCTATGCTGAAAATT
TTGCGAGGTCAGCTGAATTGTCCTA
NNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCCCC
CNCCANTCTCACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATA
CCGAATGGCAGAGAAGCACCTGAAAAATGCTCACCATCCTTAATCATCAG
GGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAA
TGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGA
GAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTATACAACC
ACTCTGGAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTAC
CGGAGGATCCAGCAATACCTCTCCTGTGTATATATCCAGAAGATGCCCCA
ACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCATCATTATTTAT
AATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGA
TACCGAACACGGGGTACATCTACCCAACGGAGTACTACTCCGCTACTTAT
AAAGAATGAATCTATGAAATTCCTAGCCAAATGGATGGATCTTGGAGTGC
ATCATCCCCGAACGAGGTAACCCATTTCCCCTAACGAACTTACACATATT
ATGGCCCCCACCGTATAACGGGTAAATAAGCCCATACTCCCAGGAATACC
CATGACAATTTGAAACACATTTTCCTAAACCTACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_l12.b1 MSMg01no063_l12.b1 CHROMAT_FILE:
MSMg01no063_l12.b1 PHD_FILE: MSMg01no063_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:11 2005
         (458 letters)



>mm_chr12_64433044_64433901
          Length = 858

 Score =  781 bits (404), Expect = 0.0
 Identities = 434/444 (97%), Gaps = 1/444 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttaaatttc-cataaattcagtttatttatttatttcagaaaaatatctagtg 63
           ||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 204 gaattccttaaatttctaataaattcagcttatttatttatttcagaaaaatatctagtg 263

                                                                       
Query: 64  attatgtgtatacacgttaatatttattatacatttagaggtttgacatattgagtgata 123
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attatgtgtatacatgttaatatttattatacatttagaggtttgacatattgagtgata 323

                                                                       
Query: 124 tcttacgatatttaagttgagatgcaaactaatgatcaacctcgtatttccaaatcttag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcttacgatatttaagttgagatgcaaactaatgatcaacctcgtatttccaaatcttag 383

                                                                       
Query: 184 tgtgcaaagacagaagtgatgtatagaagcaaatattttaaaatatttaataggtaggag 243
           |||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct: 384 tgtgcaaagacagaagtgatatatagaagcaaatatttaaaaatattaaataggtaggag 443

                                                                       
Query: 244 aataagtcaccagactgtaaacagaaaaactaaacaaactaaaatatttcacttcagcta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aataagtcaccagactgtaaacagaaaaactaaacaaactaaaatatttcacttcagcta 503

                                                                       
Query: 304 aacattattttcaaccatcaaaggcttgcaaagaaacctaagatatttggagatcaatgt 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 504 aacattattttcaaccatcaaaggcttgcaaagaaacctaagatatttggagatcaatat 563

                                                                       
Query: 364 tataaaatatttatagaagagaagcatatctcaactcagaagttgcaatcttaaggagct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tataaaatatttatagaagagaagcatatctcaactcagaagttgcaatcttaaggagct 623

                                   
Query: 424 tacgttatatatatatatatatat 447
           || ||| |||||||||||||||||
Sbjct: 624 taggttttatatatatatatatat 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)