BAC Information

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BAC

Clone NameMSMg01-063L21
Chromosome12 (Build37)
Map Location 78,353,103 - 78,353,383
singlet/doubletsinglet
Overlap geneFut8
Upstream geneMthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772
Downstream geneLOC230765, LOC666659, EG626215, Gphn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063L21.T7 (MSMg01no063_l21.b1)MSMg01-063L21.TJ (MSMg01no063_l21.g1)
ACCAG289402AG289403
length688670
length of high quality
(start - end)
82 (417 - 498)282 (52 - 333)
definitionCHROMAT_FILE: MSMg01no063_l21.b1 PHD_FILE: MSMg01no063_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:13 2005CHROMAT_FILE: MSMg01no063_l21.g1 PHD_FILE: MSMg01no063_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCGCTAAACGACTCACATCGGATGCGGACCGCGGAATTCCC
CTTCCCAAAAACTGCTACCTGATGGGATGAAAGGCACACGCCAACATGCC
TGGGTGTAACCCTTTTGCCGGTAAGCTAGGTGTAATGTCTCATGCATTAC
TCAGCCTCAGCAGCCTGCAGAAGCAGGAAGATTTCTAAGAGTTTGGGATC
AGCCTGGGCTACATAGTGAGTTCCAGGTTGGCCCTTATGGAGAGGAACAC
TGTCCCACCCCACTCCTCAAAAGCAAGATAAAAAAAAGGTCACTAAGTTA
GTTTACTTAATGCTTGCTAGTGCATGCTCCTTTTTTTTTTTTGTTAATTT
TTTATGCCCCCACCCCGCTTGAATTTAGCCAAGGTGCCCTCATTCAGCAA
ACACTACAGTCAGACCCACCCCTGAAGCCCATCCTCAGGTTCCAGAAGAT
TGCTGAGCTGACCTTAGTTAGAATCATATCTGGTAGCTGGGACCATGTGT
TTCAGTATAGGGGTTCCACTAGAGGCCTTGAATTCTATGTGGGAGGAAAG
GAGAAGGGGGGTGGGAGAGAACGAATAACACTCCTTTTCCCGCCGTCGTT
TCCAATATCACTTTCTGAAGCCCGTCCCTCTGACTAGATCCCTTTTTTTT
TTTTTTAGCGTCTACTACCCGCCCTTCTTTATCCCCTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CCAATCTGAAGCAAGAAAATTTTACAAATCACTGGCAATAAAAAGAGAAT
AATTTTAGTGAGAAAAAAGAAACAAAATGAAATAAAAAAGACATACCATC
TCCAGCCCTTTTGAGAAAGAATGAATAGGGAATCTTGAATTTTTGTCTTT
GTCTAATAAAGATACTTTAGGAAAATTAAATTCAAATGACAAATTAATTA
GTTTTAACAAGTAGAGGAAATTTTTAGAAATGGCAACCATGGGTCAATCA
TGGATGCTCACATCTTTAATACCAGCACAGGATGGTTTATGCAGCACCAT
CTCTGTGAATTCTGAGCCAGCCTAGTCTACAAAGCAAACTCCAGGAGAGC
AAGGGTATAGAGTAAAACTCCAATCTCAAATAAATAAATAAATAAATAAA
TAAATAAATAAATAAATAAATAGCCATAAGGTAAAAAGGGAACACCCCTC
GGTCAGGCAACTAGGATGGCTTTAACCTCTTTACTCAAAAAACTAAATAG
GTAACTGGATCAATCTTCAGTATCTAAAAGCAGTGTACTAGAATCAGATA
TTTTGAAAAATCTGAGGGGGTGTATTGTTTTGGGGTTTTACTTTTTTGCT
GTGTTTTGGTTTTTGTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_l21.g1 MSMg01no063_l21.g1 CHROMAT_FILE:
MSMg01no063_l21.g1 PHD_FILE: MSMg01no063_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:14 2005
         (282 letters)



>mm_chr12_78352902_78353584
          Length = 683

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%), Gaps = 1/281 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   aatctgaagcaagaaaattttac-aaatcactggcaataaaaagagaataattttagtga 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 482 aatctgaagcaagaaaattttacaaaatcactggcaataaaaagagaataattttagtga 423

                                                                       
Query: 61  gaaaaaagaaacaaaatgaaataaaaaagacataccatctccagcccttttgagaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gaaaaaagaaacaaaatgaaataaaaaagacataccatctccagcccttttgagaaagaa 363

                                                                       
Query: 121 tgaatagggaatcttgaatttttgtctttgtctaataaagatactttaggaaaattaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tgaatagggaatcttgaatttttgtctttgtctaataaagatactttaggaaaattaaat 303

                                                                       
Query: 181 tcaaatgacaaattaattagttttaacaagtagaggaaatttttagaaatggcaaccatg 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 taaaatgacaaattaattagttttaacaagtagaggaaatttttagaaatggcaaccatg 243

                                                    
Query: 241 ggtcaatcatggatgctcacatctttaataccagcacagga 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggtcaatcatggatgctcacatctttaataccagcacagga 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 683
Length adjustment: 9
Effective length of query: 273
Effective length of database: 674
Effective search space:   184002
Effective search space used:   184002
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)