BAC Information

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BAC

Clone NameMSMg01-063P15
Chromosome12 (Build37)
Map Location 28,679,037 - 28,679,318
singlet/doubletsinglet
Overlap genenone
Upstream geneSox11, LOC100043009, LOC669327
Downstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-063P15.T7 (MSMg01no063_p15.b1)MSMg01-063P15.TJ (MSMg01no063_p15.g1)
ACCAG289574AG289575
length801690
length of high quality
(start - end)
---284 (73 - 356)
definitionCHROMAT_FILE: MSMg01no063_p15.b1 PHD_FILE: MSMg01no063_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:33 2005CHROMAT_FILE: MSMg01no063_p15.g1 PHD_FILE: MSMg01no063_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCGGCCGCTATACAACTCCTATCCAAAAGGATCCNCNAATTCACCATACT
TTTAAGATTCTTTTCATCATTCNAAGACAGTAATTATAAATGCTGAAGGA
GCCTTTCTGAGGAGCTAGCGCGCCTTGATACCCTGAGAGGTGGGAAACTA
ATNCANNCTGNCTTCTAAATTAAAATTTCCTAATGCTAAACCAAAAAATT
GATTTAATCTCTTTAAAAAGGTAACCTNNNCCTTTTTCCGTAAATTCCCC
CTAATTAAATTTCCCTCTTACCCTTAAATTTNCCCAAAACCCCCCCCTTT
TCCAAATTTTCTTTCCCNCCTACTATTTTTTTATTTTTTCCCCAAATTTT
TCCCCCTCCTTATATATTCCCCCTCCTNTCCCCCTCCCCCCCCCCCAAAA
AAAATTTTTCCTCAAATAAATAAAACCNNNNNGACCCCCCCCCCCNCNCT
AATACTTTTTTCTCCACCAATAAATAAAAAAAAAAAAAAAAAAATAAAAA
AAAAAAAAAAATATCCNCCCNNCNNCNCCCCCCCTCTCCNCNNNCNTNNN
CTTTCTTTTTTTATTAATTTTTATATAAGTAATTAGAGCTTTTAAAAATC
AAAAAAATCAATAAACATAANNNCNCACCCTCCCCCCCATCNNTTCTTCC
CCTCCCNNNNTNCTCCCCCATCATTCTTAAAANCNTTTTCATCTTTTCCT
TCCCTTCTTCTATATTTTTATCTTAAATTTAATANCNACACCTATGTTCT
CCCCCTTNATNNTTTTCCNNNCCCCCCTTTCTTCTTCTAACTATATCTCA
T
GATGAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTAGCAATACCTTTACATTTTGTGCACA
AAAATATCTATTTGATTTCCTCACTGCTCAGCACGGATTTGCCAACTCCG
ACTTCATGGACAAGATCAAGGTTGTGAAGCTTCCTCTGGAAGAGTGAGGC
TCTGTTACCAAGGAGCAGCCTGTAGAAGTGAAGAAAGTCATTCTCTTATG
GGACTAATAGAATGGCTAACAAGGAGGGAGAAGAAATTAAGAAAAGATAT
CTGTGGTTCTAAAGTCATGCACCAAAACAGCATCATTTCAAGGAGACTCC
TGTCTTTTCTCCAGGCCAGGTGTGTGTTCCAACACGCCCCATTTCCCACA
CCAGTTCTTAACCAGATTCTTTTCTCTCTTTGAATCATAGCTGAGAAAAC
TCATGTACAGCCCCATCAGAGAGAAGAGCTCTGTCCTGAATGGTACACCT
CCCTTCCAGAATCCTTATCCTTCTACAGTCTGGGTGCACCATGGCTTCTG
TTCATGGGACTCTGGTGACCATACTCTCCTCTCACTTTGGCATTTGGTTC
TTGTTACAGTACCAAGTTCTGACTTGCTCTAGTCTCCTGACTTATTTCCA
TGTAACGACCAATTAGATTTAGAACCTAAGAGCGAAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no063_p15.g1 MSMg01no063_p15.g1 CHROMAT_FILE:
MSMg01no063_p15.g1 PHD_FILE: MSMg01no063_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:33 2005
         (284 letters)



>mm_chr12_28678837_28679520
          Length = 684

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagcaatacctttacattttgtgcacaaaaatatctatttgatttcctcactgctcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ctagcaatacctttacattttgtgcacaaaaatatctatttgatttcctcactgctcagc 423

                                                                       
Query: 61  acggatttgccaactccgacttcatggacaagatcaaggttgtgaagcttcctctggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 acggatttgccaactccgacttcatggacaagatcaaggttgtgaagcttcctctggaag 363

                                                                       
Query: 121 agtgaggctctgttaccaaggagcagcctgtagaagtgaagaaagtcattctcttatggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agtgaggctctgttaccaaggagcagcctgtagaagtgaagaaagtcattctcttatggg 303

                                                                       
Query: 181 actaatagaatggctaacaaggagggagaagaaattaagaaaagatatctgtggttctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 actaatagaatggctaacaaggagggagaagaaattaagaaaagatatctgtggttctaa 243

                                                     
Query: 241 agtcatgcaccaaaacagcatcatttcaaggagactcctgtc 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agtcatgcaccaaaacagcatcatttcaaggagactcctgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)