BAC Information

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BAC

Clone NameMSMg01-064A24
Chromosome12 (Build37)
Map Location 112,526,488 - 112,526,767
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn
Downstream geneCdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064A24.T7 (MSMg01no064_a24.b1)MSMg01-064A24.TJ (MSMg01no064_a24.g1)
ACCAG289640AG289641
length1,1761,212
length of high quality
(start - end)
279 (496 - 774)284 (129 - 412)
definitionCHROMAT_FILE: MSMg01no064_a24.b1 PHD_FILE: MSMg01no064_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:42 2005CHROMAT_FILE: MSMg01no064_a24.g1 PHD_FILE: MSMg01no064_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCGGCATTCGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCA
AAGGCAACAAGTTGTCTGGAATAGGAATTTTATCTATCTATCTATCTATC
TATCTATCTATCTATCTATCTATCCCTCTATCTATCTATCTAACTATCTA
TTTAGAGATGAGGTCTCTCTATGTAGTCCTGGCTGTCCTGGAGCTCTCTA
TGTAGATCAGGCTGGCCACAGAGACCCTCCGAACTTTGCCTGCCTAGTGC
TGGGATTCAAGGCATGCCTCTATGCCTAGGGAATTTAAGAAGACTTAAGA
CAGCACACCATCAAGGCTGGCATGGTTACTGTTACTGCTCTTACTAAGAT
CTACAGTAGGGAAGAGCAAAGATAATGTGTGTAGTTTGGTGAAGACAGAG
TTTGAGTAAGTTTCAAGTTGCAGGGGAGGGTGGTGTGGAAGAAGTATTTT
TTTTTGCCCCCCCCATAAGCACTATCAAAGAATCCAAAAAATACGCACTA
AGACAGTAGAAGAGAGGTGCTCTGAGTATAGACCCCACCCATCAGAAGAG
CGGTAATTAGTGAAAAAGAAGATGCATTTGAAAGAGAGACTGGATGGCTA
ACGCTGAGGAAGGAGTTCCTGCTTGGAAACACACCTCTAGAGAAGTGACT
TCCCAGGTTCCGCCATCAAGGCACAGAGAAGCCAGGATACCTGTGGAGAA
GGGGCCAGACACTATCCTCAGCTGGCAGCAGGACTTTATTGTCCACCTGG
TTTTCAGACATGAAAAAAAGGCATGATTATGAGGTAATAGAGGCAGCTTG
CACCAGGGTTCTGGAAAGCTGCTGGAGTCAAGCCAGGTCTGGTAGGGTTG
GAGACCCTGCAGTGAGGCCTCCAGAGGTCACAGTGGGAAGTTATGATGTA
ACGCCTAAATTACCCCCGAGACTCCGAGAAGCTGGAACTGCCCTGACCCT
GACATGTCTCCTTAAAAAAGGGGCGGCCCCACAATGGAACCCTCTAAAAA
AAAAAGAGGCCCCTTTTTGTTGCTGGGGCACACTTAAAATCTGGGGGCTT
CCCATCCCCTGGGAAAATAAAAACCCCTTTTTTTCTGGAAACCTTTTGAG
CCTTTGGGATTTTATATTTCCCTGTAAAAATAGAAAACACTCTTTTGCCC
ATAATATCCCCTCTTCTTTCCTTCCT
NNNGGGCGGAAGGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGAGCAGGAGCTAGACACAGGATGCCAACA
GCTTCAGGACAGCGGCTGCCAGACCCCTGCCAAGGCAGAGGCGGGGGCCA
GAGTCTTATGAGTCCAGAATTTGGGGTCTGCCTTATTCTGGAATCCAGCC
ACCCACCCAACAAGTAAGAAATGTTCAAGTGTTAATGGTTTACAGAAATC
CCATAGGAACTGGAGCACCAGCCCATCGCCAGCCACAGCTGCCAGCTCTA
TTAGCTTTCGAACACAGCTTCCCTCCTGTGCCCATCACATTCCTGTCTGG
TCCTGAATTAGCTGTATGAAGGCTTAGGGGGAGACAGCTCCTGGCTGTGC
AGGCTATACACCTGTGGCTTGGTCCTGAGCCTAGGGTCACCCACCAAAAT
TTTTTTGCCCCCCCCGCCCATGGGTCCCTTAGACACATGAAGGACCCGAA
TTTGGGCTGTTGCTACTCTTGAGAGTTTTCACCAGAACCGGGCTGTTCCT
ATCCACTTTCCTGTCATACCTCACACACAACCTCGAAACCACAGTTTGAG
CCTGCAACAAGTAGCACCCATACAGAGTAGTCAAAGAGGGTGACTCTTCA
ACGCCACCCCCAGTGAGGCAGGGGTGTCTAATTGAGACTAAGAAGTGGCC
ATACTGCCAAGGATCATCAAAGCAGAAGGTCACGGCGCAGCCAGTGCGCA
CCTTTGAGGAAGATGCTGGACTTCAGGATTACAGTAGCCTCCACTGTGAC
CGACCGCTGGCCACAGTGACTGGNCCAGGCGCAGGTCAAGGTGTTGAGGT
AAATCAGCAGCACCAGGAAACAGGGAAAATTAGATGCTACCCACCCTTTC
CCTTTGGGAAGCCGAAACCCGGGTGTTCGCCCCCGGAACTTCAAAACCCC
CTTGCCGGCAGTGGGGGGGTTTTGCGCTAACCCCTGGGTGGGGGCCCTTC
TGTGGCCCCCTGGGGGGTCTTTTCCCTGAAGAGGCCCTTTCCTCTTTTTT
TTAATCCTCGGGCTCTAAAATCCTAATTTTTTTTTTGTAAGATCCCCAAC
AGCCCCCTTCTTAGATTTTTTCTCCTCCCGAAGGAAGACCATNTTTATTT
TGTTGGTGTGTTGCACCTTCGGGCTCCGTAATAATATGTGTTTATCTACT
CTTCTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_a24.g1 MSMg01no064_a24.g1 CHROMAT_FILE:
MSMg01no064_a24.g1 PHD_FILE: MSMg01no064_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:42 2005
         (284 letters)



>mm_chr12_112526288_112526971
          Length = 684

 Score =  503 bits (260), Expect = e-147
 Identities = 275/280 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccaaggcagaggcgggggccagagtcttatgagtccagaatttggggtctgccttattc 60
           |||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct: 480 gccaaggcagaggcaggggccagaatcttatgagtccagattttggggtctgccttattc 421

                                                                       
Query: 61  tggaatccagccacccacccaacaagtaagaaatgttcaagtgttaatggtttacagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tggaatccagccacccacccaacaagtaagaaatgttcaagtgttaatggtttacagaaa 361

                                                                       
Query: 121 tcccataggaactggagcaccagcccatcgccagccacagctgccagctctattagcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tcccataggaactggagcaccagcccatcgccagccacagctgccagctctattagcttt 301

                                                                       
Query: 181 cgaacacagcttccctcctgtgcccatcacattcctgtctggtcctgaattagctgtatg 240
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 300 cgaacatagcttccctcctgtgcccatcacattcctgtctggtcctgaattagccgtatg 241

                                                   
Query: 241 aaggcttagggggagacagctcctggctgtgcaggctata 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aaggcttagggggagacagctcctggctgtgcaggctata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)