BAC Information

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BAC

Clone NameMSMg01-064D16
Chromosome12 (Build37)
Map Location 85,880,289 - 85,880,611
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52
Downstream geneChx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064D16.T7 (MSMg01no064_d16.b1)MSMg01-064D16.TJ (MSMg01no064_d16.g1)
ACCAG289762AG289763
length732735
length of high quality
(start - end)
325 (45 - 369)129 (74 - 202)
definitionCHROMAT_FILE: MSMg01no064_d16.b1 PHD_FILE: MSMg01no064_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:59 2005CHROMAT_FILE: MSMg01no064_d16.g1 PHD_FILE: MSMg01no064_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:08:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTCAGATGGAAGTGAGGGACCACTGGCTGGTTTATCTCTTAAGCA
CATTTCTATGTTATCTGCACACTTGTAACCATTAGCCTCAGGTAGCTATT
AAGTCTAAATTAAAAGTAAGTAAATATTTAAAAATTCAGCCCCAGCAGAA
ATACATGTGTCTGCCTACCATGAAGTGAGGAAGCCAAAAGGCAACGTTGT
AAGATCCTGCTTCATGCTGTTTGGACTTAGACCTTCCAAACTGTGATCTA
ATAAAATCTCTCTCCCTTTCCGTGTCTGTCTCTGTCTCCCCCTCCCTCCA
TCCCTCCCTCTTTTTTTCCCCCTCCCTTTTTTAATTTAAAGTTGTCTATA
TGTCTGTATCTGGGTGATGATGAATGAGGATGTAATACCTGTAGTGGCCA
GAAGAGGGCATCAGATCCCCAGGAGCTGGAGTACCTATATTGTGGGTGCT
AAGAACCAAATTCACAAGAGCAGTGCGTACTTCTAACCACTGAACCACCT
CTCCATCCTCTTTTCTTAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAGACCCCTTTTCAAGGGTTCAATGGCCACACCTGGCTATTG
GCCACCATGTTTGTCTGTGAAAAAAAAAAAACCAAATCTTCCCGCCCTTG
TTCATGGCGCTACTCTGCCATTATAGCAGTAT
GATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAGTCTCCTGATCCCCCAAGCTCACA
GGGTTAGAACATTGAAGTTCTTTCATGGAATTGTTTGGTTTTTAATTACT
ATTTCATGGAATGCATATACGTATGCACACATGCTTCTTTGTGAATGTCT
GTGGCTGTGAACGTGACACCATGCAAATGTGAAGGTTAAACAGCAGGCAG
AAGCTGGTCCGCTCCTGTCATGTGAATGTTGTAAATCAAACTCGATTCCA
TGCTTGTCAGCTTTACTTGATGAGCCATGCCCCCTGCCATATTTGTTTGG
TTTTTGAGATATTTTTTATCGACCCCCCCCCTGTAGCCTGGAACTCACTG
GGTAGCGCAGGCTGGCCTCTAACTGAAAAAAATTTTCCTACTTTGATTTT
CCTGCTTTGGTCTCCCAAGGGCTGGAACTAGGGAATTCTTTCCAAAGCAA
GGAACCTACTTGCTCGGTGAATATCAGCTGAATGGCTTATTGCTGTTGCC
ACTTTTTGTGCTCCAGTGCCTTACAACCAATATCAATGCCAGGAAGTCCT
GAGTGATTTCTACCATGAAGGCTGCAACTTTCAATTGCGTTTGCGTGCCC
GCGCCTGGTAGCCATTTCCTGCCCGTGCTATGCGTGGAGTGTACATACTA
TCCCGTGCATGCACTCGCGTACGCCCAATCATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_d16.b1 MSMg01no064_d16.b1 CHROMAT_FILE:
MSMg01no064_d16.b1 PHD_FILE: MSMg01no064_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:08:59 2005
         (325 letters)



>mm_chr12_85880086_85880810
          Length = 725

 Score =  594 bits (307), Expect = e-174
 Identities = 318/323 (98%), Gaps = 3/323 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccctcagatggaagtgagggaccactggctggtttatctcttaagcacatttct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccctcagatggaagtgagggaccactggctggtttatctcttaagcacatttct 263

                                                                       
Query: 64  atgttatctgcacacttgtaaccattagcctcaggtagctattaagtctaaattaaaagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atgttatctgcacacttgtaaccattagcctcaggtagctattaagtctaaattaaaagt 323

                                                                       
Query: 124 aagtaaatatttaaaaattcagccccagcagaaatacatgtgtctgcctaccatgaagtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagtaaatatttaaaaattcagccccagcagaaatacatgtgtctgcctaccatgaagtg 383

                                                                       
Query: 184 aggaagccaaaaggcaacgttgtaagatcctgcttcatgctgtttggacttagaccttcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aggaagccaaaaggcaacgttgtaagatcctgcttcatgctgtttggacttagaccttcc 443

                                                                       
Query: 244 aaactgtgatctaataaaatctctctccctttccgtgtctgtctctgtctccccctccct 303
           ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 aaactgtgatcaaataaaatctctctccctttccatgtctgtctctgtctccccctccct 503

                                  
Query: 304 ccatccctccctc---ttttttt 323
           |||||||||||||   |||||||
Sbjct: 504 ccatccctccctcctcttttttt 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)