BAC Information

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BAC

Clone NameMSMg01-064O16
Chromosome12 (Build37)
Map Location 6,045,037 - 6,045,444
singlet/doubletsinglet
Overlap genenone
Upstream geneAtad2b, LOC668332, Klhl29, 2810032G03Rik, LOC435292, LOC100042095, LOC672098
Downstream geneLOC100043137, LOC238049, LOC100042118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-064O16.T7 (MSMg01no064_o16.b1)MSMg01-064O16.TJ (MSMg01no064_o16.g1)
ACCAG290253AG290254
length1,2071,204
length of high quality
(start - end)
432 (30 - 461)313 (133 - 445)
definitionCHROMAT_FILE: MSMg01no064_o16.b1 PHD_FILE: MSMg01no064_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:14 2005CHROMAT_FILE: MSMg01no064_o16.g1 PHD_FILE: MSMg01no064_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGATCAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CTTGAAGAAAATTAGTATTTTGAAGAATCTTTGTCTACTTTCAAATTAGT
TCTTCCTGCCTACCTTTTCATGCTATCACCCACTGGCCAATGGCCTTTAT
CTCATCCTTCTTATCACAAAGCCACTGAGCACCAGATTCTTGTGAAATAG
AACTTTTACAAGGCGAAAATGGAAGGAATCATTACTTCAACCTGACACTT
CCCTCTGTCTTTCTTTTTACTAAGTAATATGTCAAACTAATTCAATTCAT
TGTGTCCATTTTTCTCCAGCAGATCAGAAGTAAATGAATGTGCTCTATAT
AATCAGGAAGCCAATGCAAATACAGAATTCAACATAGACCATTCAAAGAC
TATAATATACCCAGAGATAAAAAAAATTAATGCAAAAGTTAATGATTCAT
ATTTTTTTTGCCCCCGCCACCTGTCAACACTTCTGACAAAAAAAAATAAT
ATTTAGTATTTTGATACTTTATCTTGTAAAAAGAATTTTATCCTTCTCTC
TCTGTATTCCTCAACATGAAAAGAAGGTCAGAGCAGAGTTGTAAATGTTA
GACAGGGAGACTGATAACCATACTTTCTGGTGACAATGAAATTCCTACCT
TCATAGAAGGGATTGGTTCTTTTCAGCCATTGCCAGCAAATAATCTCTAG
AACCAATTCTAAATCCATCCTAGTTGATCAATGACAGCTTTGCATCATTA
AGCATGCTTCTGAATGCCAGTCAGTCAATGACAGCCCAATATTTCTGAAA
ATCAGCCAATGAGTAACAATGATTTTTAAGTAACCAAGTTTTCATTGCTT
AAAGTCAAGCAATATCTAAACACTCTTGCTTTTGATAATCTGTCAACGCC
TGACCTCCACAATTGCTCATATAAAAAGAGGTCTCAGCTTTGTTCACAGG
GGCCCCCCAGGCAAAGGGCTCCTTTGAAAAAAGCTTAACCTTGGGGTTTA
TTCCCCAAAAATAAACCCGGTCTGGCTTAAATTTGTTTGGGAACATAATT
GAAATATTTTAAAAAATTTAATTTTTTTTTGTACCCAACACACCTCTGGG
AACGGGGTTTATTCTTCTCCCCTAAAGGTTAAGGGCCCCCAAAAGTAAAA
AAAAAGTCTTTTTTCTTCTTTAAAAAAAATTCCTCCCCGCGGTGGTGGTG
AAAAAAG
NNNCCCTGACGGGAGNCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAGA
TATGCTTTTAAATCCAGGTCTACCTTTCCCGGTGTGTTAGGGTGTCCTGG
ATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGC
TTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTG
GAGTTAGTTGTTATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATT
TTGTTACCCTCTATCAGCAGGCGTGGGAGACGTGGGAGACAAGCTCTCTT
CTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCT
CAGGGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGTTGATTT
TTTTTTCCCCCCCCAGGATCTTTCCCAGAAGCTGAGAAAAAATGGCCAGG
AAGGTGGCCAGTTGTCTGGAGTCGAAGATGTCGCAGCCTCAGAAGCTCTG
TGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAGGATGGTGCCG
CCCCAGAATCTCTGCGACTCTCTCGCCCGTCCCAGAAACAGCTGGCACTC
TGTATTCCACACGGTCACCCATGCAGCCTGCCCTCCGCGGAGTCCCAGAG
CCAAGAAGGTTCCCGCCGGCGCCTGTGCCACAAACCTCTCAGGCCAGGCA
GACCCCCGTGCTCTCATCAGGAAGGTGTCCGTTTTGCTGTATCTGAAGAT
GTCGCCTCCCAGAAGTTCTGTGATTTTCTTGCCCGTCCCGAAAACAGTTT
GGATTTTGTTTTTCTATACGTTTTACTCGTGGTAGTTTGTTCTCCTCGGG
ATCCCTGAACCATATATGTTTCTCGTTCTTGGCCTTGTGGTCTTTAATCC
TTTCTTTGTACGGATATACTCCTGGTTTCTCTATTTTTATTTGTTCTTTG
TTTTCTTATATTATTTTATTCTCTTTCTTATATTTTTTTGTAATTTTTTC
CACTTCCTTTAATTTATTTTTATTTTTTTTTTTTATTATTTTTTCTTCGT
TTATTGTTTTCTTCTCTTTTCTTTTTATTCTTTAATATTTATCTTTTTTT
CTCTTTTGTTTTTTCTCTCTTCTTTTGTTTACTTTCTCATCTTTTTCTCT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no064_o16.b1 MSMg01no064_o16.b1 CHROMAT_FILE:
MSMg01no064_o16.b1 PHD_FILE: MSMg01no064_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:14 2005
         (432 letters)



>mm_chr12_6044821_6045653
          Length = 833

 Score =  774 bits (400), Expect = 0.0
 Identities = 406/408 (99%), Gaps = 1/408 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattcttgaag-aaaattagtattttgaagaatctttgtctactttcaaattagttctt 75
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaattcttgaagaaaaattagtattttgaagaatctttgtctactttcaaattagttctt 565

                                                                       
Query: 76  cctgcctaccttttcatgctatcacccactggccaatggcctttatctcatccttcttat 135
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 564 cctgcctaccttttcatgctattacccactggccaatggcctttatctcatccttcttat 505

                                                                       
Query: 136 cacaaagccactgagcaccagattcttgtgaaatagaacttttacaaggcgaaaatggaa 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cacaaagccactgagcaccagattcttgtgaaatagaacttttacaaggcgaaaatggaa 445

                                                                       
Query: 196 ggaatcattacttcaacctgacacttccctctgtctttctttttactaagtaatatgtca 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggaatcattacttcaacctgacacttccctctgtctttctttttactaagtaatatgtca 385

                                                                       
Query: 256 aactaattcaattcattgtgtccatttttctccagcagatcagaagtaaatgaatgtgct 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aactaattcaattcattgtgtccatttttctccagcagatcagaagtaaatgaatgtgct 325

                                                                       
Query: 316 ctatataatcaggaagccaatgcaaatacagaattcaacatagaccattcaaagactata 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctatataatcaggaagccaatgcaaatacagaattcaacatagaccattcaaagactata 265

                                                           
Query: 376 atatacccagagataaaaaaaattaatgcaaaagttaatgattcatat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atatacccagagataaaaaaaattaatgcaaaagttaatgattcatat 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 833
Length adjustment: 9
Effective length of query: 423
Effective length of database: 824
Effective search space:   348552
Effective search space used:   348552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)