BAC Information

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BAC

Clone NameMSMg01-065C07
Chromosome12 (Build37)
Map Location 49,175,011 - 49,175,356
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039190, EG664891
Downstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065C07.T7 (MSMg01no065_c07.b1)MSMg01-065C07.TJ (MSMg01no065_c07.g1)
ACCAG290423AG290424
length693683
length of high quality
(start - end)
346 (63 - 408)335 (69 - 403)
definitionCHROMAT_FILE: MSMg01no065_c07.b1 PHD_FILE: MSMg01no065_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:34 2005CHROMAT_FILE: MSMg01no065_c07.g1 PHD_FILE: MSMg01no065_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:10:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCA
ATAATACCGCTTTATTACTTAAGTTTTTTTCACATCAGTCACTATCTACT
ATTAAGATATTAAACAAACTAGGGAATCAAAGTAGACTAGAAACAAATTG
GACATTGTCCAAAGATGTGAAGCTTAGACATTTCACAAATGGGTCAATGA
AAAGAATAATCATTCTCACATGAATTCCTATTATTAACTTCTAAAGATAA
AAATGCATCTATTTTCCTATTTATTAAAACATACAGGATAAATTTCAATG
TCAATTAATTATGTGATATCCTGTTCTAGGGTCCCTTCTAATACTACACA
TATAAGGTATGGAAATTTACTTTTATATTTATATATAGTGTGATAATCCT
TTTGATCTTATCTTGGACAAAAATTGTACATTGATCTGCTTGTTCAAGGC
CTGTTTACTTTCGATGAAAATCCTGAAGTATGATAACCATATAGACTTCT
TAAGTGATTAATTCTTACTATAATAAAGACAATGTCTGAAAATATTTACT
TTTATCCTGCTTTTACAAGTCTTATCTTAAAAAGTCTTTACTTCTTTCCT
ACTAAACTTTATGAGAATTCATTTGTTTAACTGACTCTATCACTAACATC
TTACCTTATCATACCTTGATTTATTATTTGAACCTTCCCTACT
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTAGAAGTTCTCTTATTGTTGAGAATAGTTT
TTACCATCCTGGGTTTTTTGTGATTCTAGATACATTTGAGAATTGCTTTC
TATCTTCATGAAAACCTGAGTTGGAATTTTGAGGGGGATTGCACTGAATC
AGTAGATTGCTTTTCGTAAGATGGCCATTTTCAATATGTTGAGCCTGGAG
CCTTACTTATAATAACCAGAAGCTGGAAACAACCCAGATTTCTCTCAACG
GAGAAATCCATACAGAAAATGTGGTACATTTAAACAGTGGAGTATTACTT
AAGTGTAAAAACAATGAATTCATGAAATTCATAGGCAAATGGATGGAATG
AGAAAATTTCATCTTGATTAATGTAACCGAGTCACAAGTGAACACGCATG
GTATGTATTCACTGATAAGTGGATATTTGGCATAAAGCTAATAATACCCA
GTTATCTCCTCACAGACCATATGAAACTCATGAAGAAGGCAGACCAAAGT
GTGGATGCTTCAATCCTGCTTATAACGGGAAACAAAATATTCACAGGAAT
TCGTTTGAGGAATTGACCTACGAGCACGAACCCACAGGGCTGTAAAAGTA
ACCGCGCTCTGCTGTGGTTACATACTGGAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_c07.b1 MSMg01no065_c07.b1 CHROMAT_FILE:
MSMg01no065_c07.b1 PHD_FILE: MSMg01no065_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:10:34 2005
         (346 letters)



>mm_chr12_49174811_49175556
          Length = 746

 Score =  638 bits (330), Expect = 0.0
 Identities = 342/346 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattacttaagtttttttcacatcagtcactatctactattaagatattaaacaaactag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 tattacttaagtttttttcacatcagtcactatctactattaagatattaaacaaactag 487

                                                                       
Query: 61  ggaatcaaagtagactagaaacaaattggacattgtccaaagatgtgaagcttagacatt 120
           ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 486 ggaatcaaagtagacaagaaacaaattggacattgtccagagatgtgaagcttagacatt 427

                                                                       
Query: 121 tcacaaatgggtcaatgaaaagaataatcattctcacatgaattcctattattaacttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tcacaaatgggtcaatgaaaagaataatcattctcacatgaattcctattattaacttct 367

                                                                       
Query: 181 aaagataaaaatgcatctattttcctatttattaaaacatacaggataaatttcaatgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aaagataaaaatgcatctattttcctatttattaaaacatacaggataaatttcaatgtc 307

                                                                       
Query: 241 aattaattatgtgatatcctgttctagggtcccttctaatactacacatataaggtatgg 300
           |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 306 aattaattatgtgataacctgttctagggtcccatctaatactacacatataaggtatgg 247

                                                         
Query: 301 aaatttacttttatatttatatatagtgtgataatccttttgatct 346
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 aaatttacttttatatttatatatagtgtgataatccttttgatct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)