BAC Information

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BAC

Clone NameMSMg01-065N15
Chromosome12 (Build37)
Map Location 80,510,559 - 80,511,180
singlet/doubletsinglet
Overlap geneRad51l1
Upstream geneGphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26
Downstream geneLOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-065N15.T7 (MSMg01no065_n15.b1)MSMg01-065N15.TJ (MSMg01no065_n15.g1)
ACCAG290963AG290964
length658669
length of high quality
(start - end)		628 (31 - 658)360 (73 - 432)
definitionCHROMAT_FILE: MSMg01no065_n15.b1 PHD_FILE: MSMg01no065_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:28 2005CHROMAT_FILE: MSMg01no065_n15.g1 PHD_FILE: MSMg01no065_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:11:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTATACGACTCCTATTCAGAGAGATCCGCGGAATTCCTGATTCT
CCTCCTTCTATCTCTCCCCCCCCACCCCCCAGTGCCAGGATTCCAGCTGT
GAGTCAGGATTCCAGCTGTGAGCTGCCTTGCTGACTGATGGTTTTCATTT
TAAGACACTCTGCTTTTCATGGAATTATGGTAATGCACAGTCCCAGAGGC
CCCACATCTCTTTTGTTCGTTCCTCTGAGCAGTCTCAGTTCAGTTACTTC
TCCCTGAAAATGCCCTCAACAGACAGAGCCCAGAGGTGTCCCTCATCAGA
CTTCTAGGAGATTCTAAGTATAGTCAAGTTGACAGTGGAGATTAGCCATC
AGACCCTTCCATAGTGACTGAAGTAGACAAGAAATGCTGACCACAATAAT
ATTACTCAGAATTTCTTTTTTTAAATTGATTTATATGTAGGTGTGTTTGC
CTATATGTACGTCTGTGTACTACAAGCATGCATGGTACCAATGGAGGCCT
GAGAAGACATCAGATCCCCTGGAACTGAAGTTACAGATAGTTTGATTCAC
CATATGTGAGTGCTGAGAATTGAACTCAAGTCTTCTTAAAGAACAGCCAG
TATTCTTAACCACTGAGCCATCTCTCTAACTCGTCAGAATTTCCAATTTT
TGCAACAA

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATGTCCTTTTGATGGATCTTCCCTTTG
TAGTTTCATTCCTTATCTCTTCTGATTAATTTTGGTTTGAAGTCTATTTT
GTAAGATATTAAAATGACTACACTAGCTTGCTTTTTAGGTCCATTTGCTT
GGAATATCTTTTTTTCAACCGTTTCATCACCTGGAAGTGATATCTACCCT
TGATGTTAAGGTGTATTTCTTGGATGCACCAGAAGTATGGATACTATTTT
CACGGATCCATTCTGTTAGACTGTGTCTTTTCACTGGAGAATTGAGAATA
CGGATGTGGAGAGATATTAATGAGTTGTGTTTGTTGATTTCTGCTACTTT
GTTGCTGTTGCCCCCCCTGCTGTTGCTGCTCCTGCCGTGACGCGTGTGTT
TCCCCTCTTTTGACTTGTTGTTCTGGACTTTATTTATTCCCTGATCTTTC
TTGCTTGCCTAATCCCTTTATATTGGATTTTTCCTTCCAGTGCCTTCTGC
ATATTACAGATTTGCCGACCCGATTTACTTTAGTCTTTCTTGATTAAGAT
ATGACCCTAATTTTGCATTTTTTGTGACATAATAAATCAAGATATTTTTT
TTCTCATCCTTTTGTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no065_n15.b1 MSMg01no065_n15.b1 CHROMAT_FILE:
MSMg01no065_n15.b1 PHD_FILE: MSMg01no065_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:28 2005
         (628 letters)



>mm_chr12_80510353_80511379
          Length = 1027

 Score = 1158 bits (599), Expect = 0.0
 Identities = 617/623 (99%), Gaps = 2/623 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcctgattctcctccttctatctctccccccccaccccccagtgccaggattccag 66
           ||||||||||| |||||||||||||| | ||||||||||||||| |||||||||||||||
Sbjct: 207 gaattcctgatcctcctccttctatc-ccccccccccacccccccgtgccaggattccag 265

                                                                       
Query: 67  ctgtgagtcaggattccagctgtgagctgccttgctgactgatggttttcattttaagac 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctgtgagtcaggattccagctgtgagctgccttgctgactgatggttttcattttaagac 325

                                                                       
Query: 127 actctgcttttcatggaattatggtaatgcacagtcccagaggccccacatctcttttgt 186
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 326 actctgcttttcatggaattatggtaatgcacagtcccagaggccccacatctcttctgt 385

                                                                       
Query: 187 tcgttcctctgagcagtctcagttcagttacttctccctgaaaatgccctcaacagacag 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcgttcctctgagcagtctcagttcagttacttctccctgaaaatgccctcaacagacag 445

                                                                       
Query: 247 agcccagaggtgtccctcatcagacttctaggagattctaagtatagtcaagttgacagt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agcccagaggtgtccctcatcagacttctaggagattctaagtatagtcaagttgacagt 505

                                                                       
Query: 307 ggagattagccatcagacccttccatagtgactgaagtagacaagaaatgctgaccaca- 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 506 ggagattagccatcagacccttccatagtgactgaagtagacaagaaatgctgaccacac 565

                                                                       
Query: 366 ataatattactcagaatttctttttttaaattgatttatatgtaggtgtgtttgcctata 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ataatattactcagaatttctttttttaaattgatttatatgtaggtgtgtttgcctata 625

                                                                       
Query: 426 tgtacgtctgtgtactacaagcatgcatggtaccaatggaggcctgagaagacatcagat 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tgtacgtctgtgtactacaagcatgcatggtaccaatggaggcctgagaagacatcagat 685

                                                                       
Query: 486 cccctggaactgaagttacagatagtttgattcaccatatgtgagtgctgagaattgaac 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cccctggaactgaagttacagatagtttgattcaccatatgtgagtgctgagaattgaac 745

                                                                       
Query: 546 tcaagtcttcttaaagaacagccagtattcttaaccactgagccatctctctaactcgtc 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tcaagtcttcttaaagaacagccagtattcttaaccactgagccatctctctaactcgtc 805

                                  
Query: 606 agaatttccaatttttgcaacaa 628
           |||||||||||||||||||||||
Sbjct: 806 agaatttccaatttttgcaacaa 828


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1027
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1017
Effective search space:   628506
Effective search space used:   628506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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