Query= MSMg01no065_p09.b1 MSMg01no065_p09.b1 CHROMAT_FILE:
MSMg01no065_p09.b1 PHD_FILE: MSMg01no065_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:36 2005
(621 letters)
>mm_chr12_49282747_49283767
Length = 1021
Score = 853 bits (441), Expect = 0.0
Identities = 488/505 (96%), Gaps = 4/505 (0%)
Strand = Plus / Minus
Query: 119 gctatctactgc--ttatattggctttgcttaagtgagtttttgttgttttggttttgtt 176
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 gctatctaatgcttttatattggctttgcttaagtgagtttttgttgttttggttttgtt 962
Query: 177 ttctctctctttttccttctttctttctttctttctttctttctttctttctttctttct 236
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ttctctctc--tttctttctttctttctttctttctttctttctttctttctttctttct 904
Query: 237 ttcttccttccttccttccttccttccttccttccttccttccttcctttctttctttct 296
| ||||||||||||||||||||||| ||| ||| ||| ||| ||| ||||||||||||||
Sbjct: 903 tccttccttccttccttccttcctttctttctttctttctttctttctttctttctttct 844
Query: 297 ttctttcttcctttctttctcttgattttggttcttagttttgcattcttgctcaagaat 356
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 843 ttctttcttcctttctttctcctgattttggttcttagttttgcattcttgctcaagaat 784
Query: 357 ataggtacaaaagaaaatatacttcatttttaattttaatccatccccaatgatatgtag 416
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 ataggtacaaaagaaagtatacttcatttttaattttaatccatccccaatgatatgtag 724
Query: 417 agccgtgctctgaggcaatgctggacactgaaaaaggaaccacaggtccccatcagccat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 agccgtgctctgaggcaatgctggacactgaaaaaggaaccacaggtccccatcagccat 664
Query: 477 aagatcccatcagccacacacttattactgttgcaaaacctcaccttaagtaaaaatcgt 536
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 663 aagatcccatcagccacacacttattactgttacaaaacctcaccttaagtaaaaatctt 604
Query: 537 ctacacttgtaagcactggaatacggttgtctgggaagacttcaagtaaaatttagaaag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ctacacttgtaagcactggaatacggttgtctgggaagacttcaagtaaaatttagaaag 544
Query: 597 caaaacttattttttcttatatgga 621
|||||||||||||||||||||||||
Sbjct: 543 caaaacttattttttcttatatgga 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 104
Number of extensions: 24
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no065_p09.g1 MSMg01no065_p09.g1 CHROMAT_FILE:
MSMg01no065_p09.g1 PHD_FILE: MSMg01no065_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:36 2005
(567 letters)
>mm_chr12_49211484_49212450
Length = 967
Score = 1019 bits (527), Expect = 0.0
Identities = 557/567 (98%)
Strand = Plus / Plus
Query: 1 ctctttccagtttgaccaggtgtgactttgtaacaagttgcatgttgagtcctttgagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctttccagtttgaccaggtgtgactttgtaacaagttgcatgttgagtcctttgagca 260
Query: 61 cttggcaacttgtgatatagctgattcatatgttttatacttacatttttttagaattgt 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 cttggcaacttgtgatatagctgattcatatgttttatacttacaattttttagaattgt 320
Query: 121 tcattttttccagatagtggccgtggtttgaaatcttaccaacagtgaatgggggattct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcattttttccagatagtggccgtggtttgaaatcttaccaacagtgaatgggggattct 380
Query: 181 attttctacatccttaccaacgttgttgtctgacattccttgattgttgattaagataag 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttctacatccttaccaacattgttgtctgacattccttgattgttgattaagataag 440
Query: 241 atgaaatctcaaagtttttgtttttatttccacagttgttaaggataatgaattctctct 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaaatctcaaagtttttgtctttatttccacagttgttaaggataatgaattctctct 500
Query: 301 aaatattccctatcatttgtaatgttatatataccaatttcatcgcttaatgtgtttaat 360
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 501 aaatattccctatcatttgtaatgttatatataccaattttattgtttaatgtgtttaat 560
Query: 361 atccatttgtgctagctacttaactttacattaatattctccctgctttcacaataatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atccatttgtgctagctacttaactttacattaatattctccctgctttcacaataatct 620
Query: 421 ccttcagggttacattgtccctgattaagcctgttcagtattacctttcttggcatgttg 480
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 621 ccttcagggttacgttgtccctgattaagcctgttcagtattgcctttcttggcatgttg 680
Query: 481 tgtgaatggagcagtacattgtgagcaacacattattggcttctctcaggatgtttaaaa 540
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 681 tgtgaatggagcagtacattgtgagcaacaccttattggcttttctcaggatgtttaaaa 740
Query: 541 attcactcaggttgtaaataaaaatga 567
|||||||||||||||||||||||||||
Sbjct: 741 attcactcaggttgtaaataaaaatga 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
