Query= MSMg01no066_d23.b1 MSMg01no066_d23.b1 CHROMAT_FILE:
MSMg01no066_d23.b1 PHD_FILE: MSMg01no066_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:58 2005
(572 letters)
>mm_chr12_85706957_85707929
Length = 973
Score = 1064 bits (550), Expect = 0.0
Identities = 568/576 (98%), Gaps = 6/576 (1%)
Strand = Plus / Plus
Query: 2 gaattctacttgttggt--taccatttttccattatttgagtctttgtgtgtggtgtgca 59
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattctacttgttggtgatac-atttttccattatttgagtctttgtgtgtggtgtgca 260
Query: 60 gtgcgttctgtctggggaagccttacagttgtgtagagtggctgtctcaggtcaaatggc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcgttctgtctggggaagccttacagttgtgtagagtggctgtctcaggtcaaatggc 320
Query: 120 aggatggtgttagtgctcaggatagtgtgtgtctagggagttggatgattagttttgcag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggatggtgttagtgctcaggatagtgtgtgtctagggagttggatgattagttttgcag 380
Query: 180 tactgagcttgaactagaacctcacacttggtaggcacggcacctcggacctatgtccca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactgagcttgaactagaacctcacacttggtaggcacggcacctcggacctatgtccca 440
Query: 240 gcctagaaatttcctttccaaggctaagggaccagttggttttctgttttactttttgtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctagaaatttcctttccaaggctaagggaccagttggttttctgttttactttttgtt 500
Query: 300 gctgccttgtcttttgtttgctttcgagacacgctctcattctgtagccttggctgactg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgccttgtcttttgtttgctttcgagacacgctctcattctgtagccttggctgactg 560
Query: 360 aaatcatagccatcctgccttagcctccagatgtgaacccctggagctggtttatatttg 419
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatcatagcaatcctgccttagcctccagatgtgaacccctggagctggtttatatttg 620
Query: 420 tttctgattgaatacttaaaacataaaattatacatattaatgatgtaccttgtaatatt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttctgattgaatacttaaaacataaaattatacatattaatgatgtaccttgtaatatt 680
Query: 480 ttgattcatgcatacattgtataattttaaatctgcttaaacatttatgctcttaaattt 539
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgattcatgcatatattgtataattttaaatctgcttaaacatttatgctcttaaattt 740
Query: 540 attatttttgaagacttaaaaattctt---gctttt 572
||||||||||||||||||||||||||| ||||||
Sbjct: 741 attatttttgaagacttaaaaattcttcttgctttt 776
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 973
Length adjustment: 10
Effective length of query: 562
Effective length of database: 963
Effective search space: 541206
Effective search space used: 541206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no066_d23.g1 MSMg01no066_d23.g1 CHROMAT_FILE:
MSMg01no066_d23.g1 PHD_FILE: MSMg01no066_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:11:58 2005
(640 letters)
>mm_chr12_85876317_85877356
Length = 1040
Score = 874 bits (452), Expect = 0.0
Identities = 544/586 (92%), Gaps = 23/586 (3%)
Strand = Plus / Minus
Query: 75 tctctggcatcaggattttatttgttactctgaaaagaacgtggctgggagtggactggg 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 tctctggcatcaggattttatttgttactctgaaaagaacgtggctgggagtggactggg 981
Query: 135 tatggtggcgtaaacctctcaagatgtatgtg------tgtgcatgtctatgtaaatgaa 188
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 980 tatggtggcgtaaacctctcaagatttatgtgtgtgcatgtgcatgtctatgtaaatgaa 921
Query: 189 cgcagtggatgtgggtgctcaccgagcctaggagagggtgtcaga----tt--------a 236
||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 920 cgcagtggatgtgggtgctcaccgagcctaggagagggtgtcagatcagttgaagctgca 861
Query: 237 gttgtgcacctcctgatgtgtgtgcagggaacgggactcgggttctctgcaagagcgaca 296
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 860 gttgtgtacctcctgatgtgggtgcagggaacgggactcgggttctctgcaagagcaaca 801
Query: 297 agtgctcttaactgctgaaccgtctccacactatctgtggattctagaacagccaggtct 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 agtgctcttaactgctgaaccgtctccacactatctgtggattctagaacagccaggtct 741
Query: 357 accgtgctgtctcaaaggggaaggggacataatttaattgaaaagtgactattaaaactc 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 740 accgtgctgtctcaaaggggaaggggacataatttaattgaaaagtgactattatagctc 681
Query: 417 aggaaataaaactagaggacagtcacaccaaaccccaccccaagtgcttactatatatgc 476
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 680 aggaaataaaactagaggacagtcacaccaaactccaccccaagtgcttactatatatga 621
Query: 477 tcaggaagcagacctagatctctctaaccatgatctctctatccatctctacctctttat 536
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 620 tcaggaagcagacctagatctctctaaccatcatctctctatccatctctacctctatat 561
Query: 537 ccatgatctctatatccatccctacctctatatccatgatctctctatccatct--ctac 594
||||||||||| |||||||| |||||||| |||||||||||||| |||| |||| |||
Sbjct: 560 ccatgatctctctatccatctctacctctctatccatgatctctatatctatctatctat 501
Query: 595 ctctctatccatgatctctatatctatctatctatctatctatcta 640
|| |||||| | |||| | ||||||||||||||||||||||||||
Sbjct: 500 ctatctatc--t-atctatctatctatctatctatctatctatcta 458
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
