BAC Information

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BAC

Clone NameMSMg01-066L10
Chromosome12 (Build37)
Map Location 44,153,798 - 44,154,161
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039059, ENSMUSG00000066507, LOC100039081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-066L10.T7 (MSMg01no066_l10.b1)MSMg01-066L10.TJ (MSMg01no066_l10.g1)
ACCAG291621AG291622
length755778
length of high quality
(start - end)
364 (133 - 496)273 (105 - 377)
definitionCHROMAT_FILE: MSMg01no066_l10.b1 PHD_FILE: MSMg01no066_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:36 2005CHROMAT_FILE: MSMg01no066_l10.g1 PHD_FILE: MSMg01no066_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:12:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTTTTTTTTTTTTCCCCCCTCCCTTTTTTTCCTCTCCCNNNNCAATTA
AANNNAACACGATGATATGAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCACTCTGGTAACAT
CACGTTAAAATCTTTTGTTAGTTCTTGGGTCAGCTGAGAGTGTTTTGTGA
GATTGTACCTATCATTAAGGAAAGCAATATGTGAACTAGTCATTGAAAAC
AATTATTTAGCAGGTAATTATCTTCTTTAGAAAATCATTTTGCACTTTAA
ACTAATATAACTTCTTTGTGTGGCCCACCATCTTATTGAATTTAAAGAAT
TGGTCGATGATAATGCACCTTTCTCCGACTAAATTTTAAGAAGTTCTCCA
CACTGAAAATCCAATTAGTCCTTTATGTAAAAGTGGATACTTGTTCCTTA
CACACAAAATTGTATTATGGAGATCCTAGGAGGACCTTCTGTAAAGTTGG
TGAGCATCCTGGTATTTGCATTTTAGTTTGTTAATGATAACTAAAATTCA
ATTATGAATTCTTTCTGACTGTGCTAAATTGATTTCAACTTTACCTTTAA
CGGATGATCCCTATGGTCCTCTTACATGTTATACACTTCCTTTCCTTTAG
AATAATGATCAAACATCCATTTGTTAATCTGTTCCAGTAGCGCTTATGCC
CCCGTTTTATAAATGTTTTTTTTCTTAACTCATTATTTTTTCGTCTTTTT
CTACC
NNNCCCCCCCNNNNNCCCCCCNCCNNCCCNCCCCACNCCCCNNNAANNTT
TTTAGNTCTACTCTATAATTGCGGCGCTATACGACTCACTATTTCGAGAG
AACCGCGGAATTCTTTGTTTTTCTCGGAGCCCCATTTTTTATTGGGGTTA
TTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTGTATATATGTTGGATAT
TAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTG
GTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTCG
AGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCAT
TGCTGCTCTGTTCAGGAATTTTTCTCCTGTGCCCATATCCCCAAGGCTTT
TTCCCACTTTCTCCTCTATAAGTTCCACTGCCTCTGGCTTTATGTGAATT
TCCTTGATCCACTTACATTCGATCTTATTTCCAGGTGATTAGTATGGATT
GATTCGTATACTTCTACACGATAACAACCAGTTGTGCCAACTTTATTTGT
TTTTTATGCCGTCTTTCCTTCCTCTGGCTTGTTCTTAATTCCCTTGCTTT
TATACCATGTTGATCATCGGTCGTGAGGTTTTCATTTTCACGCTCTTTCA
CATTCTACTTTCTTTGGTCCTACTTGTACTGACATTCTTTTCATGAACTA
TTGTTATTTCACTATTACCAATTGTCTCTGTTATTTTCTACCTTTTCGCC
TTGGTCCTGCTCGTTTTCCTATTTGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no066_l10.b1 MSMg01no066_l10.b1 CHROMAT_FILE:
MSMg01no066_l10.b1 PHD_FILE: MSMg01no066_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:12:36 2005
         (364 letters)



>mm_chr12_44153598_44154361
          Length = 764

 Score =  688 bits (356), Expect = 0.0
 Identities = 362/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcccactctggtaacatcacgttaaaatcttttgttagttcttgggtcagctgagagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcccactctggtaacatcacgttaaaatcttttgttagttcttgggtcagctgagagtg 505

                                                                       
Query: 61  ttttgtgagattgtacctatcattaaggaaagcaatatgtgaactagtcattgaaaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttttgtgagattgtacctatcattaaggaaagcaatatgtgaactagtcattgaaaacaa 445

                                                                       
Query: 121 ttatttagcaggtaattatcttctttagaaaatcattttgcactttaaactaatataact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttatttagcaggtaattatcttctttagaaaatcattttgcactttaaactaatataact 385

                                                                       
Query: 181 tctttgtgtggcccaccatcttattgaatttaaagaattggtcgatgataatgcaccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctttgtgtggcccaccatcttattgaatttaaagaattggtcgatgataatgcaccttt 325

                                                                       
Query: 241 ctccgactaaattttaagaagttctccacactgaaaatccaattagtcctttatgtaaaa 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctccgacaaaattttaagaagttctccacactgaaaatccaattagtcctttatgtaaaa 265

                                                                       
Query: 301 gtggatacttgttccttacacacaaaattgtattatggagatcctaggaggaccttctgt 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 264 gtggatacttgttccttacacacaaaattgtattatggagatccaaggaggaccttctgt 205

               
Query: 361 aaag 364
           ||||
Sbjct: 204 aaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)