BAC Information

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BAC

Clone NameMSMg01-067E06
Chromosome12 (Build37)
Map Location 6,517,744 - 6,518,370
singlet/doubletsinglet
Overlap geneLOC100042118
Upstream geneLOC435292, LOC100042095, LOC672098, LOC100043137, LOC238049
Downstream geneLOC668380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067E06.T7 (MSMg01no067_e06.b1)MSMg01-067E06.TJ (MSMg01no067_e06.g1)
ACCAG292043
length699699
length of high quality
(start - end)
---627 (73 - 699)
definitionCHROMAT_FILE: MSMg01no067_e06.b1 PHD_FILE: MSMg01no067_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:19 2005CHROMAT_FILE: MSMg01no067_e06.g1 PHD_FILE: MSMg01no067_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAAAACTATGTGTATGGTAACTTAAGGG
TTCTTGTTCACTGATGTGTTCAAAGCCCTTGGGGTAATTTCAGTCATTAG
TAGATACCTAATGAATTCTTCTCACATGAATGAAAAGACTACATAAATAC
TGTACCCTTACTAAACTTTGGGTGTTTTAAGAATGACTCACTTTAATAAA
ATAGGTACAAGCAGATGCATGGAGATATGCAAGGATGTATTAACACTTAT
GGATATGATATGTTACTACAGATAGCTTTGGCTTTAAGAATAGATCTCAG
AATACTTGGTAATATAGAGAGCTTTAGCATGACATTTGCAATCACAAGAT
CTGAAACCAAACTAGGATCATAAGAAGCAAGAGTATGAAAAGATGAACTT
GAATATGTGTGTATCCCTTTGCTTGTGTTTCACAACCATAGCCTATGCAT
GTGCCAAGTTCTCAGAAATGAGTATATCCCTCCAGCAAGTAGGAATTGAA
AGCATAACTATAAACTCTATCATCAAGGTGCCTACAGTATAAACCCAGAA
GAAAATAAGAGAATAATGACATAATAAAATGGTAAATAAATACACAAAAT
CCAGAGGTTCACTAAATGTTAAGATTCAAGTTATAGTGTGGAATTTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_e06.g1 MSMg01no067_e06.g1 CHROMAT_FILE:
MSMg01no067_e06.g1 PHD_FILE: MSMg01no067_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:19 2005
         (627 letters)



>mm_chr12_6517432_6518458
          Length = 1027

 Score = 1158 bits (599), Expect = 0.0
 Identities = 620/627 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaactatgtgtatggtaacttaagggttcttgttcactgatgtgttcaaagcccttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 aaaaactatgtgtatggtaacttaagggttcttgttcactgatgtgttcaaagcccttgg 880

                                                                       
Query: 61  ggtaatttcagtcattagtagatacctaatgaattcttctcacatgaatgaaaagactac 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 879 ggtaatttcagtcattagtagatacctagtgaattcttctcacatgaatgaaaagactac 820

                                                                       
Query: 121 ataaatactgtacccttactaaactttgggtgttttaagaatgactcactttaataaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 ataaatactgtacccttactaaactttgggtgttttaagaatgactcactttaataaaat 760

                                                                       
Query: 181 aggtacaagcagatgcatggagatatgcaaggatgtattaacacttatggatatgatatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aggtacaagcagatgcatggagatatgcaaggatgtattaacacttatggatatgatatg 700

                                                                       
Query: 241 ttactacagatagctttggctttaagaatagatctcagaatacttggtaatatagagagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ttactacagatagctttggctttaagaatagatctcagaatacttggtaatatagagagc 640

                                                                       
Query: 301 tttagcatgacatttgcaatcacaagatctgaaaccaaactaggatcataagaagcaaga 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 639 tttagcatgacatttgcaatcacaagatctgaaaccaaactaggatcacaagaagcaaga 580

                                                                       
Query: 361 gtatgaaaagatgaacttgaatatgtgtgtatccctttgcttgtgtttcacaaccatagc 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 579 gtatgaaaagatgaacttgaatatgtgtgtatccctttgcctgtgtttcacaaacatagc 520

                                                                       
Query: 421 ctatgcatgtgccaagttctcagaaatgagtatatccctccagcaagtaggaattgaaag 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 519 ctatgcatgtgccaagttctcagaaatgagtatatccctccagcaagtaggaatcgaaag 460

                                                                       
Query: 481 cataactataaactctatcatcaaggtgcctacagtataaacccagaagaaaataagaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 cataactataaactctatcatcaaggtgcctacagtataaacccagaagaaaataagaga 400

                                                                       
Query: 541 ataatgacataataaaatggtaaataaatacacaaaatccagaggttcactaaatgttaa 600
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 399 ataatgacataataaaatggtaaataaatacacaaaatgcagaggttcactaaatgctaa 340

                                      
Query: 601 gattcaagttatagtgtggaatttgat 627
           |||||||||||||||||||||||||||
Sbjct: 339 gattcaagttatagtgtggaatttgat 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)