BAC Information

Click to search

BAC

Clone NameMSMg01-067F23
Chromosome12 (Build37)
Map Location 62,893,970 - 62,894,220
singlet/doubletsinglet
Overlap geneLrfn5
Upstream geneLOC100040300, LOC665677, Nanog-ps2, LOC665699
Downstream geneLOC665707, LOC100040403, LOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067F23.T7 (MSMg01no067_f23.b1)MSMg01-067F23.TJ (MSMg01no067_f23.g1)
ACCAG292123AG292124
length707723
length of high quality
(start - end)
190 (126 - 315)252 (74 - 325)
definitionCHROMAT_FILE: MSMg01no067_f23.b1 PHD_FILE: MSMg01no067_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:27 2005CHROMAT_FILE: MSMg01no067_f23.g1 PHD_FILE: MSMg01no067_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATAATTGCGGCGCTACACGACTCCTATAGGTACCGGACCGAGNGNAA
TCTTTGNTTAGTTTCGAAAACATTTTTTAATGAGGTATTTGATTTTCTGG
AGTCTACCTTCTTTATTTCTCCATGATATCGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCATTTTGTC
TGATTGATGGTGTCATTGGCTTACAGTAGCTTTGCAATTTTATGAGCTCC
CATTTGTTGATTCTTGATCTTACAGCACAAGCCATTGCTGTTCTATTCAG
GAATTTTTCCCCACATAACTAATTTGGTTTTCCCCACTTTCTCCTCTATA
AGTTTCTGTTTTTTTTATCCCCCCCGCCCTTCCTTTATCCACTTAGATTT
GACCTTAGTACTTGGAGATAGGAATAGAAAGATATGCATTCTTCTACATG
AAAACAACCAGTTGTGCCAGCACCAATTGTTGATAATGCTGTCTTTCTTC
TACTGGATGGCTTTAGCTCCTTTGTTGAAGATCAAGTGACCTTAGGTGTG
TGGCTTCATTTCTGGGTCTTCTATTCTATTTCCATTGGTCTACCTGCCCA
TCTCTATAACAGCACCATGCTAATTTTATCACAATTGCTCTGTACGCAAT
CTTTATTTTTCTTTATGGCGATCCCACCAGAGGTTATTTTATCCTCGCAG
AATAGTA
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATAAACTCATTACTTTACTTGAAAGA
AAATTACAGATGGCATTACAACATGCCCCTTTAAAATAGATTATTTCTCC
TTGAAATTAATAGAACTTTTCACTCTTAAAAATCTAAAAGAAAGACAAGA
AGAACAAAGACAGTTGTGACTTTGCAGGAAGTACCAGGAGAGGTTTGAAG
CCTGTGATATCAAAAGCACACTGATTTAAAAAATGCAAACAGAGGAGCAT
CAAGCAATAAACACAAGTTTGCTCAAAGAACTAGAGTGATATTCACCTGA
CTTCTCTTCTTCTTTTTTTTTTTTTTCCCCCCCCCCCCCATATTATTACT
CAGTACTGAAATATTTTACAACTTCATGAATATAAAAAAAAATTTATTTT
TTCCTGAGCAGATATTATAGATTTGTGTGATTTCAAATTGTATCATTTCA
GTCAATCATTTATATCATTCCGCCCATATATCACACTACTTTATTTTGTT
GATAGATATCTATTATGTACCTCTTACATCTGTGTTTAAACCTTATGATT
TTTACTCATAAGTTACTACTGAGTGTTTTTTTGTGCTTTTTTTCTGAGCA
ATTGTTTTTTTTCCATTTACTCTATCTTTTGCTATCCCTGTATTGTTTGC
TTCTCCCCTTATTTTTTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_f23.g1 MSMg01no067_f23.g1 CHROMAT_FILE:
MSMg01no067_f23.g1 PHD_FILE: MSMg01no067_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:27 2005
         (252 letters)



>mm_chr12_62893770_62894420
          Length = 651

 Score =  449 bits (232), Expect = e-131
 Identities = 247/254 (97%), Gaps = 5/254 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataaactcattactttacttgaaagaaaattacagatggcattacaacatg--cccctt 58
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||     |||
Sbjct: 451 cataaactcattactttacttgaaagaaaattacagatggcattaaaacatgaa---ctt 395

                                                                       
Query: 59  taaaatagattatttctccttgaaattaatagaacttttcactcttaaaaatctaaaaga 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 taaaatagattatttctccttgaaattaatagaacttttcactcttaaaaatctaaaaga 335

                                                                       
Query: 119 aagacaagaagaacaaagacagttgtgactttgcaggaagtaccaggagaggtttgaagc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aagacaagaagaacaaagacagttgtgactttgcaggaagtaccaggagaggtttgaagc 275

                                                                       
Query: 179 ctgtgatatcaaaagcacactgatttaaaaaatgcaaacagaggagcatcaagcaataaa 238
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ctgtgatatcaaaagcacacttatttaaaaaatgcaaacagaggagcatcaagcaataaa 215

                         
Query: 239 cacaagtttgctca 252
           ||||||||||||||
Sbjct: 214 cacaagtttgctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 651
Length adjustment: 9
Effective length of query: 243
Effective length of database: 642
Effective search space:   156006
Effective search space used:   156006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)