BAC Information

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BAC

Clone NameMSMg01-067G17
Chromosome12 (Build37)
Map Location 57,083,959 - 57,084,240
singlet/doubletsinglet
Overlap genenone
Upstream geneBaz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915
Downstream geneLOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067G17.T7 (MSMg01no067_g17.b1)MSMg01-067G17.TJ (MSMg01no067_g17.g1)
ACCAG292158AG292159
length730692
length of high quality
(start - end)
163 (71 - 233)281 (72 - 352)
definitionCHROMAT_FILE: MSMg01no067_g17.b1 PHD_FILE: MSMg01no067_g17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:31 2005CHROMAT_FILE: MSMg01no067_g17.g1 PHD_FILE: MSMg01no067_g17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTATTTATTCCACGTATGGCCCACAACTCTAGGAAATCCTCCTGCCTCA
ACCTCTCAAAGAGATTATAGCCCTGAGCCACCACACCTTCCTCTCCCTCT
CTCCTTCTCCCCTCCCCACTCTGTGTGTGGATGTGTATGCCTGTGTGTAG
AGCATATGCATGTGTGTGCAGTTGCCCATATAATGCATGTACAGAGNCAG
AGATGGAGNTGAGTGGCTGCCTCNATTGCTCTCCGCCTTACTATCTTATG
CCTTTACCCACTATAACTTTGTATTTAATCAATTGACATATATTGATTGA
TAAATGTTATTTTTATTATACCCCCTCCCATCTCTTAATAATCGTTTCTC
TTCTCATTACTTAGTTGTTACTTTAAATACATTAATAGTCCTCGTATATA
ACGGACTTCTCTCATCTCCTGTCTTGTAATATATGTGTATTTATTTTTAT
ATATGATGAGCCAGCCCGCCAAGGAGGTCCTCCATTATTTTTTCTCGCCG
GGGTCTACTCCTTTGTGGGCTTGAGCGCGCACGCGNGCGCAACCCGTCTA
CTGCCACAACNCNTGCGTGGCCCGCCCTACAGAAAGGGCTGTGGTGTGGT
TGCGTCCACCCGCCGCGCNNCNCGTTTTAGCTAATGCTGATTTTGCCGTA
CTGGCATTGTGTTCTTTTTATATTCTACTA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTGCGAAAAACAAGTGGTTTTATCTACTGGAGGTGAGGAACC
TATGACTGGAAGATTAGCCCCTCTCCGTTGACGGTTGATTCCTAGTAATG
TGATCTTTGCAAGGGGCAAAAGGCTACACTCTCTCCTCAGAAATGCCCAA
CTCACCCATTGGCTCCTTCTTCCAGAAGTTCACATGCAGATGATGTTATC
AGCTGGGTCTCCGAAACTCAGCAGCTGTGGAAGCTGCATTTTATGAAAAG
ATGAAGCAGCCAGTGGTTATGATAGAGGGTCTGCCCTTGCTGAGTCCACA
AGACTTCTTCTTATACCTCCCCCCCCCCTGAGCTAGTGGTGGATAGTTTC
GTTCAAAGTGATTTGGAGACAAAAGAACACTCATAGCTTTAGGGCATTCA
CTGCTAGGGAGAAGCACAACCTGATAGCCTAAGTATCCAGGTGGAGCTGC
CTAGGTAAACAACCTAGTAGACAGGCACACAGTGGGGCTAGAAGCATAAA
TCTAGCAGCTTAGTTCCTTTCGGTCTGCCTGCCTGAAGAAAGGTCTAATA
ACCTGGCTGGGAGGGAGCCCAGCAGGCGAAAACTTCTAGGAAACCTATCG
GGTTGGTCGTTCCTAGTCCAGTCAAAAAAGGTAAGTTTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_g17.g1 MSMg01no067_g17.g1 CHROMAT_FILE:
MSMg01no067_g17.g1 PHD_FILE: MSMg01no067_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:31 2005
         (281 letters)



>mm_chr12_57083759_57084440
          Length = 682

 Score =  484 bits (250), Expect = e-141
 Identities = 274/282 (97%), Gaps = 1/282 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtggttttatctactggaggtgaggaacctatgactggaagattagc-ccctctccgttg 59
           ||||||||||||||||||||||||||||||||||||||||||  |||  ||||||| |||
Sbjct: 482 gtggttttatctactggaggtgaggaacctatgactggaagaaaagcaacctctccattg 423

                                                                       
Query: 60  acggttgattcctagtaatgtgatctttgcaaggggcaaaaggctacactctctcctcag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 acggttgattcctagtaatgtgatctttgcaaggggcaaaaggctacactctctcctcag 363

                                                                       
Query: 120 aaatgcccaactcacccattggctccttcttccagaagttcacatgcagatgatgttatc 179
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 362 aaatgcccaactcacccattggctccttcttccagaaggtcacatgcagatgatgttatc 303

                                                                       
Query: 180 agctgggtctccgaaactcagcagctgtggaagctgcattttatgaaaagatgaagcagc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 agctgggtctccgaaactcagcagctgtggaagctgcattttatgaaaagatgaagcagc 243

                                                     
Query: 240 cagtggttatgatagagggtctgcccttgctgagtccacaag 281
           |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 242 cagtgggtaggatagagggtctgcccttgctgagtccacaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 682
Length adjustment: 9
Effective length of query: 272
Effective length of database: 673
Effective search space:   183056
Effective search space used:   183056
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)