BAC Information

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BAC

Clone NameMSMg01-067K04
Chromosome12 (Build37)
Map Location 66,163,419 - 66,163,728
singlet/doubletsinglet
Overlap genePrpf39, Fkbp3
Upstream geneEG623046, LOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik
Downstream geneFancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067K04.T7 (MSMg01no067_k04.b1)MSMg01-067K04.TJ (MSMg01no067_k04.g1)
ACCAG292323AG292324
length701699
length of high quality
(start - end)
314 (45 - 358)286 (74 - 359)
definitionCHROMAT_FILE: MSMg01no067_k04.b1 PHD_FILE: MSMg01no067_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:48 2005CHROMAT_FILE: MSMg01no067_k04.g1 PHD_FILE: MSMg01no067_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:13:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACCAAACACCAAGCTCATTTTTGAAGTGGAATTAGTAGACATTGA
CTGAAACCAGTACTTCAGATCGGACATCAGCAAACATAAAAATGAGCTGT
GGCTAATTAGAGCTTGTAAGGGAAGAGTCAACTGGAAAATTTAGAGTTAA
AGCTTGTTTACTTGATCTCACATTTTGAGAAACATAATCCTGTTACTCCC
TTTAAGTCTCAGATATTTTCCTACAGCTATGTAAAGTATTCCAGAGAGCT
GCTTTCCTTTTACCTCGTAAACTAGAAGACTCAATAAAAGTGTCATGGAT
TGTCTTGATTGATTTATCTACCCGCCGCCCCCTGTATTCTAATTAGGTAA
AAACTAGTGACTCTGTCCCAAGAGTTGAGCTGCTAATCAAGGTGGCTAGC
TTTGTCAAGGACATTTAAAATATAATACTTCATGGTGGAAATTAAAAGGC
ACTGGAACTTGAAACAAAACCAAAACAGTTAAAACATTCTGGTAGGAAGA
TAATATATTTACAGAAAAATTTACTTCAATACCATGTTAATCTCTATTTT
GTTGTACCTCCCCCAAATGAACTCATCTTCATTTGCTGCATGAGTCTCCA
TTTTTATTATAAAAATGATAAGTCTGATCAACTTGAAGGCTTGCCCTTCA
C
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCTGAG
AAGCACCTGAAAAAATGTCCAGCATCCTTAGTCATCAGGGAAATGCAGAC
TTTTTGGGATAGCACTGGAAATGTAAATGAAGAAAATACCTAATAAAAAT
ATATTAGAAAATTAAAAATAATAATAATAAATAAGTAAATAATGTGGTAT
ATGGAGATATAATTCCTTTTTTGTTTTTTAAAGAAGGTATTATTTTAAAG
TTCCACAATGCCTTGTCCTTGAGAATTATAAAGAATCCCAGTCTTAAAAA
AAAAAAATGGGTGCTTAACTTAAAAAAAAAAAATCCCAGTATATGGGTAA
TAATAAATTACCCACAAAACATCGCAAATGCTTGACTTTAATAGCCAGTT
CCTTTATTTGTTTTAACCCGATTTAGAACACCAGGCATAGAAAAATAATG
CAAGCAATGACTAATTACAGTTTTAGTTGCTCACACCATACTTTGTGTCT
GATCTTTGCTAAATAACAGCTAAATTGAATACCTGGGACATTCCTGCAAA
CAATTTTAATTCTGTTGCGTTTAACCCCTGACTTTGCACCTTCAGTAGAC
TGGTTACCTTCTCACAGGATCGTCTTCCGCATGTTTATCTATTCCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_k04.b1 MSMg01no067_k04.b1 CHROMAT_FILE:
MSMg01no067_k04.b1 PHD_FILE: MSMg01no067_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:13:48 2005
         (314 letters)



>mm_chr12_66163215_66163928
          Length = 714

 Score =  592 bits (306), Expect = e-173
 Identities = 309/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaccaaacaccaagctcatttttgaagtggaattagtagacattgactgaaacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattccaccaaacaccaagctcatttttgaagtggaattagtagacattgactgaaacc 455

                                                                       
Query: 65  agtacttcagatcggacatcagcaaacataaaaatgagctgtggctaattagagcttgta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agtacttcagatcggacatcagcaaacataaaaatgagctgtggctaattagagcttgta 395

                                                                       
Query: 125 agggaagagtcaactggaaaatttagagttaaagcttgtttacttgatctcacattttga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 agggaagagtcaactggaaaatttagagttaaagcttgtttacttgatctcacattttga 335

                                                                       
Query: 185 gaaacataatcctgttactccctttaagtctcagatattttcctacagctatgtaaagta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gaaacataatcctgttactccctttaagtctcagatattttcctacagctatgtaaagta 275

                                                                       
Query: 245 ttccagagagctgctttccttttacctcgtaaactagaagactcaataaaagtgtcatgg 304
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 274 ttccagagagctgctttccttttaccttgtaaactagaagactcaataaaagtgtcatgg 215

                     
Query: 305 attgtcttga 314
           ||||||||||
Sbjct: 214 attgtcttga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)