BAC Information

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BAC

Clone NameMSMg01-068F02
Chromosome12 (Build37)
Map Location 32,979,843 - 33,105,314
singlet/doubletdoublet
Overlap gene2010109K11Rik
Upstream geneLamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg
Downstream geneLOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068F02.T7 (MSMg01no068_f02.b1)MSMg01-068F02.TJ (MSMg01no068_f02.g1)
ACCAG292840AG292841
length687686
length of high quality
(start - end)
317 (56 - 372)285 (86 - 370)
definitionCHROMAT_FILE: MSMg01no068_f02.b1 PHD_FILE: MSMg01no068_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:43 2005CHROMAT_FILE: MSMg01no068_f02.g1 PHD_FILE: MSMg01no068_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,105,005 - 33,105,314)(32,979,843 - 32,980,102)
sequence
TAGGTTNTAAAGTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCCGAGGATACTTACTAAGCCACATAGAACCAGTA
AAATATGACTCATATATTTGAGACAAAACATTGCCAGAGATTCAAGAGAA
AGGGAATCACTTACTATTCAGAGTTCTCCCAGTAACTGACAAATACAGAA
AATAGAGCTGAACAAGATAGCACCACCCATCAACTACATCTGATTGATAT
TTATGGCAAACTTCAACAATAGTAGAACACTTTCTTCTAAACATATACAG
GAATCACCAAGAAATACAACCTGGTCCATAAAACAGTTTTCAAAGAACTT
AAAGGAATAAGAATTATACTTATTTTTTGCTCACCACACCGACGAATCAC
ACTAGAAAGAATTACAGAAAGATGGCTGGCAATTGTCCAAAACTGTTAGA
GATTGAACAACCCACTGTTAAGTGACAAATAAGTCAGGGACGCCCAGGAG
AGGCGTGGTAGTTTCTGGAAATTAAAATACAACCTTTACAAATGTATGAA
AGCACACAGAAGTGTTCAGAATTTTGACATTGTGATACAACATTGTCATA
TTCCAAGCTCACACCTAAAACTCATAATCAAGTTACAAAATTAAAGTTGA
AAAAATAAAGCTCACAGAAGTGAAAGAAAACTAATAA
TATAAAAAAATTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAAGGGCACTTA
AAGTTTTAGGTTTTTTTTTTTTTTTTTAGTAATTCTTAGTTATATTTTTA
AAAGCCACAGGATTCAAAGTTTGCCATTGTAACAACATTGGAATGGTTTG
TTGGAACTCAGTATTTTCATATTCTTGTGTGATAGATTTCAAGAATCTTT
TGCTTTAGAAAACTGAACCTTGATTATACTTGATTAAAAATAAAACACAT
TTTCTCCATTTCTTTCCTCCATGCTGCCCTGACTACCATTATTCTACATC
CTGAGTATCTGACTAATTTATATATTTCTCATGAACCCAATCAGATGGTA
TGTATCATATCTTGGCTGGCAAAAATCACTATCGCAAAATCCTCAAGCTT
GTCCAGTTTTGCCCTATTTAAAGGCTGTATAATATTCTCTTATGTGGATG
CTCTGTTCTTTGCTCCTCTGTCTGTAGATAGACATCTCTTCAGGCTGCTT
TCACCTCTGGCTACCGTGAATGAGGCTACCCTGTGCGTCGTATATCTAGA
TATCCCTTTGAGATCTTGTTTTCACCATTTTGCAAACAAAAGGAATAATT
TTTAAAAAATAAACCCTCTGCCAACTCAAAATATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_f02.b1 MSMg01no068_f02.b1 CHROMAT_FILE:
MSMg01no068_f02.b1 PHD_FILE: MSMg01no068_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:43 2005
         (317 letters)



>mm_chr12_33104965_33105681
          Length = 717

 Score =  553 bits (286), Expect = e-162
 Identities = 304/310 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccgaggatacttactaagccacatagaaccagtaaaatatgactcatatattt 64
           |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 350 gaattctccgaggaaacttactaagccacatagaaccagtaaaagatgactcatatattt 291

                                                                       
Query: 65  gagacaaaacattgccagagattcaagagaaagggaatcacttactattcagagttctcc 124
           |||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gagacagaacattgatagagattcaagagaaagggaatcacttactattcagagttctcc 231

                                                                       
Query: 125 cagtaactgacaaatacagaaaatagagctgaacaagatagcaccacccatcaactacat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 cagtaactgacaaatacagaaaatagagctgaacaagatagcaccacccatcaactacat 171

                                                                       
Query: 185 ctgattgatatttatggcaaacttcaacaatagtagaacactttcttctaaacatataca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ctgattgatatttatggcaaacttcaacaatagtagaacactttcttctaaacatataca 111

                                                                       
Query: 245 ggaatcaccaagaaatacaacctggtccataaaacagttttcaaagaacttaaaggaata 304
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 110 ggaatcaccaagaaatacaacctgggccataaaacagttttcaaagaacttaaaggaata 51

                     
Query: 305 agaattatac 314
           ||||||||||
Sbjct: 50  agaattatac 41


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no068_f02.g1 MSMg01no068_f02.g1 CHROMAT_FILE:
MSMg01no068_f02.g1 PHD_FILE: MSMg01no068_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:43 2005
         (285 letters)



>mm_chr12_32979618_32980302
          Length = 685

 Score =  472 bits (244), Expect = e-137
 Identities = 256/260 (98%)
 Strand = Plus / Plus

                                                                       
Query: 26  tttttttttttttttttagtaattcttagttatatttttaaaagccacaggattcaaagt 85
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 226 tttttttttttttttttagtaatttttagttatatttttaaaagccacaggattcaaagt 285

                                                                       
Query: 86  ttgccattgtaacaacattggaatggtttgttggaactcagtattttcatattcttgtgt 145
           ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttgccatcgtaacaacgttggaatggtttgttggaactcagtattttcatattcttgtgt 345

                                                                       
Query: 146 gatagatttcaagaatcttttgctttagaaaactgaaccttgattatacttgattaaaaa 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gatagatttcaagaatcttttgctttagaaaactgaaccttgattatacttgattaaaaa 405

                                                                       
Query: 206 taaaacacattttctccatttctttcctccatgctgccctgactaccattattctacatc 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 taaaacacattttctccatttctttcctccatgctgccctgactaccattattctacatc 465

                               
Query: 266 ctgagtatctgactaattta 285
           ||||||||||||||| ||||
Sbjct: 466 ctgagtatctgactacttta 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)