Query= MSMg01no068_g12.b1 MSMg01no068_g12.b1 CHROMAT_FILE:
MSMg01no068_g12.b1 PHD_FILE: MSMg01no068_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:50 2005
(188 letters)
>mm_chr12_40124292_40124879
Length = 588
Score = 364 bits (188), Expect = e-105
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 1 ccctccttcgtttctttctgtagaaatcaaaacaattctctatactctacacattaaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctccttcgtttctttctgtagaaatcaaaacaattctctatactctacacattaaaac 260
Query: 61 cagcacaatattttgaaactattttaaagtaccaatgtagtcataaatccagaaaataaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcacaatattttgaaactattttaaagtaccaatgtagtcataaatccagaaaataaa 320
Query: 121 taaaagttggcttgggttgatagtttaagaaagaaatcataggttcttgatagaaagaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaagttggcttgggttgatagtttaagaaagaaatcataggttcttgatagaaagaca 380
Query: 181 aacagatg 188
||||||||
Sbjct: 381 aacagatg 388
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 588
Length adjustment: 8
Effective length of query: 180
Effective length of database: 580
Effective search space: 104400
Effective search space used: 104400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no068_g12.g1 MSMg01no068_g12.g1 CHROMAT_FILE:
MSMg01no068_g12.g1 PHD_FILE: MSMg01no068_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:50 2005
(481 letters)
>mm_chr12_40298187_40299067
Length = 881
Score = 828 bits (428), Expect = 0.0
Identities = 468/482 (97%), Gaps = 4/482 (0%)
Strand = Plus / Minus
Query: 1 ccagtaccctgtgcaagagcagtcagtgcctaacacctgagccatctctccagctctggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ccagtaccctgtgcaagagcagtcagtgcctaacacctgagccatctctccagctctggt 648
Query: 61 tctgatcatctttgagcatagtaactgattttttttttctgacacgctggaagttatttt 120
||||||||| |||||||||||||||||| | |||||||||||| |||||| ||||||||
Sbjct: 647 tctgatcatatttgagcatagtaactga-tatttttttctgactcgctgg--gttatttt 591
Query: 121 tgacgtttaaaaacaaaaatataattattaaaattttgt-aaacacatttactttgccta 179
| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 590 tttcatttaaaaacaaaaatataattattaaaattttgtaaaacacatttactttgccta 531
Query: 180 atatatgaaacaatgctgctctttgggaatgaaaattcattcaattttgttttagactga 239
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 530 atatatgaaacaatgctgctctttgggaatgaaaattcattcaactttgttttagactga 471
Query: 240 tgataattatactcaccattgcaactctgattattgtaatttgtgtttataatgcatctt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tgataattatactcaccattgcaactctgattattgtaatttgtgtttataatgcatctt 411
Query: 300 gcagtttctcatgtatgctctcactcattcttctaaggaacattttgttcagtttctggg 359
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gcagtttctcatgtatgttctcactcattcttctaaggaacattttgttcagtttctggg 351
Query: 360 gctgtgacaaatgccattatcagaagcaacagaggagactaaacgatgtttttcagttta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 350 gctgtgacaaatgccattatcagaagcaacagaggagactaaacgatgttttttagttta 291
Query: 420 gagcccatcctctagagaagtcagttcaggaactcaagcaaggagcagaggcaaaagctc 479
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 290 gagcccatcctctagagaagtcagttcaggaactcaagcaagaagcagaggcaaaagctc 231
Query: 480 tg 481
||
Sbjct: 230 tg 229
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
