BAC Information

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BAC

Clone NameMSMg01-068H22
Chromosome12 (Build37)
Map Location 99,152,406 - 99,152,892
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628277, LOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770
Downstream geneLOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068H22.T7 (MSMg01no068_h22.b1)MSMg01-068H22.TJ (MSMg01no068_h22.g1)
ACCAG292976AG292977
length735733
length of high quality
(start - end)
327 (46 - 372)492 (67 - 558)
definitionCHROMAT_FILE: MSMg01no068_h22.b1 PHD_FILE: MSMg01no068_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:56 2005CHROMAT_FILE: MSMg01no068_h22.g1 PHD_FILE: MSMg01no068_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCAAAGTAAAAGAGAGATGTGCCATACAGTGTTGTATATGAGAA
TGTTTATGTATATGTGACAATATGTATGTGGTAGTTTGAATAAGAATTGC
CCCCCCCATAGGTTTATACATTTGATTGCTTGGTCACCTGGGCATGGCAC
TATTAGGAGGCGTGGCTCTGTGGGAGGAAGTGTGTCACTGAGTGTGAGCT
TCGAAGTTTGAGAAACTCAAGACAGGTTGAGTGGCTCTTCCTGAAGGCAG
CCTACAGATCTGGATGTAGAATTCTTAGCTCCTTCTCCAGCATCATGTCT
GCCTGCATGCTGACATGCTTCTTTTTTTGATCGCACCCCCCCCCAAACCT
CTGAACTGTAAGCCAGCCCCAACAAAATGTTTTCCTATATGAATACATGA
GGTCATGGTATCTCTTCACAGCAACAGAACACTGACTAAGACAGTGTATC
TATGAATATATATATATATGAATATCTATTTTTCTCCTCATGATGAGCGC
TCAGAGGGGCAAGAGCCATTTGTTCTTTGAAGCATGGAGCTCAGACCCTG
GTATAATGTAGAAATGAATGAATGACCTCTTGTGCCCTACGGATAATTGA
ACAGGAAGAGCATGGTGACATACCCTGTGGCTATCACCTGTTACATTACT
TGTGGTTATTGCCTTCCATATATCCCCCCTCCTAA
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGCACTTCCCTGCTGTCCACTTCTGCTCCTGCAC
TGAGTCTAAGGAGGTGATGGAAGGCAGCTTAGGGGATACCTTCCCCAGGA
CACAAGAGAAGAATGCTCCGTTGGTCAAAGTGGCCAAACATGAGAGTGGT
CCAGAGCCTCACCTCCAGTGACATAGCCGAAGCTATGTCAGTTCTTCTCA
TGAGAGCGTCCATCTTCTCTGCTAGCACAAAACCACATCAGCTTCTGTTC
TCCTCTGTAGGGGTTTGTTGTGGAAGTAAGTGCAGAGGTCATATGGCTTC
CCCAACGTGGCTTTTAAATGTGTTAGCCTTGCTTTCTGCTTCCCCAACTG
CCCATGTGAGAGATACTGGGAAGCTAACCTAGGTAGTTAGGGAGCCTTCA
GGAGCATCACAGAATACTACTCTGGTGAGCCACAGTTTCCTTGTCATTGA
GAAAAAGCTCTTTTCCTCCTATTCTTTCAGAAATGTGAAGGTAGAACATA
GAATTCAATTTTGTTCTACAAATTCCTGGTGGCAAATGATCCTGAGAAGA
CATTGCGTGTACTTATTTGTGTATCTATCTATCTATCTATCTATCTATCT
ATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAACTAT
CTATCTATCCATCAATCTATCCTATCTATCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_h22.g1 MSMg01no068_h22.g1 CHROMAT_FILE:
MSMg01no068_h22.g1 PHD_FILE: MSMg01no068_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:57 2005
         (492 letters)



>mm_chr12_99152201_99153092
          Length = 892

 Score =  888 bits (459), Expect = 0.0
 Identities = 480/487 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   ttccctgctgtccacttctgctcctgcactgagtctaaggaggtgatggaaggcagctta 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttccctgctgtccacttctgctcctgcactgagtctaaggaggtgatggaaggcagctta 633

                                                                       
Query: 66  ggggataccttccccaggacacaagagaagaatgctccgttggtcaaagtggccaaacat 125
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 632 ggggataccttccccaggacacaagagaagagtgctccgttggtcaaagtggccaaacat 573

                                                                       
Query: 126 gagagtggtccagagcctcacctccagtgacatagccgaagctatgtcagttcttctcat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gagagtggtccagagcctcacctccagtgacatagccgaagctatgtcagttcttctcat 513

                                                                       
Query: 186 gagagcgtccatcttctctgctagcacaaaaccacatcagcttctgttctcctctgtagg 245
           ||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||
Sbjct: 512 gagagcgtccatcttctcttctagcacaaaaccacagcaggttctgttctcctctgtagg 453

                                                                       
Query: 246 ggtttgttgtggaagtaagtgcagaggtcatatggcttccccaacgtggcttttaaatgt 305
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggtttgttgtagaagtaagtgcagaggtcatatggcttccccaacgtggcttttaaatgt 393

                                                                       
Query: 306 gttagccttgctttctgcttccccaactgcccatgtgagagatactgggaagctaaccta 365
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ggcagccttgctttctgcttccccaactgcccatgtgagagatactgggaagctaaccta 333

                                                                       
Query: 366 ggtagttagggagccttcaggagcatcacagaatactactctggtgagccacagtttcct 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggtagttagggagccttcaggagcatcacagaatactactctggtgagccacagtttcct 273

                                                                       
Query: 426 tgtcattgagaaaaagctcttttcctcctattctttcagaaatgtgaaggtagaacatag 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgtcattgagaaaaagctcttttcctcctattctttcagaaatgtgaaggtagaacatag 213

                  
Query: 486 aattcaa 492
           |||||||
Sbjct: 212 aattcaa 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)