BAC Information

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BAC

Clone NameMSMg01-068J20
Chromosome12 (Build37)
Map Location 65,665,120 - 65,665,300
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435302, EG623046
Downstream geneLOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068J20.T7 (MSMg01no068_j20.b1)MSMg01-068J20.TJ (MSMg01no068_j20.g1)
ACCAG293068AG293069
length711737
length of high quality
(start - end)
109 (137 - 245)191 (90 - 280)
definitionCHROMAT_FILE: MSMg01no068_j20.b1 PHD_FILE: MSMg01no068_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:06 2005CHROMAT_FILE: MSMg01no068_j20.g1 PHD_FILE: MSMg01no068_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAAATCATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTTTGTATACCACCGCTGGCCTCGAACTCAGGAAGTCTGCC
TGCTTCTTCCTCCCAAGTTCTGGGATTAACCCCGTGCGCCACGATGCCTG
GCATAAAATAAATTTTCTCAGAGTAAAGGCTGAATTACTTTTTATTTTTT
TTCTCTTACTGGATATTTTCTTTATTTACATTTCAAATGTTATACACACG
CACACACACACACCATACACACACACAAACCATACACACACACACACACT
CACTAAGCATACACACACTCACGCACACACATTTATGCACCATACACACA
CACACACGCACACATACATTTAGATACTCTCCCCCCCCCACCCACACACA
CTCACTCACAAACACACATACTATGCTGCCCACAAAAAAAAAAAACAGAG
AGGGGGGGGAGACGTAATTTATGATTCAATCTATACATTTAGCTTATCTT
GGAAAAGTTGATTAAATGGAAATTTAAAGGAAATTGGTGGCCTTGCTTCC
CTAAATGCAAGTTTTAAGGAGGCTGAGTACACCGTATGGCATCACAATCT
GAATATTCCAATAAGTGACCTCCATCTACTTTATTAATATGTTTTGAACG
TTTGGAAAAAATTCAGTCTTCTGAAGCCAGGAGGAATTTAACATCCTTTC
TCCCATAAATG
NCCACCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAACTAGCTAA
AGGAGTTCATCAGGAACTGCTAGGTTCTGCGAAAAACCTTCTTTCAATAA
GGTAAGATAGTAATAGTGGATGTTACTTGGCATTGACCACTGTCCTCCAC
ACACTTGCACACACGTGTATACAAATGCACTTATACTTAAGGAAGAGGGG
AAAGGGAAAGGAGGGAGGGAGGAAGAGAGGCAGGTATATCACTCGTCTGT
TATATTTCATTCCTAATATTTTTTATTTATTTATTAATTTTATATTCCAA
TATCACCCCCCTCTCCTCTTATTTTCTCTCCACACCCACCCCTATCTCTT
TATCCCTCCACTCCTCTGAAGTGATGGACATTACAAACACACAACACTCT
GCGCGGTGCTTCTTTCCTATTTTCCATATTTTCACTCATCATACTTATAA
CTCTTCTCCACTATCATGTCTATTGTCTATATTGCCCACATTCTTCCTCT
CTCTGTTGTCTATCTACGTACTTCCTTCTCCCTCTACAAATTGATTTACA
TGATCCTTTACTCTTTTTGAGCATCGTTCTCATTTCTCTCATTATACGCT
TCATTTTGCTTAAAGCACTATTCTTTTATATTTGGCTTCTTTATTCCCCA
TATCCACTAACTCCTCCACTATCCTTCTTTGCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_j20.g1 MSMg01no068_j20.g1 CHROMAT_FILE:
MSMg01no068_j20.g1 PHD_FILE: MSMg01no068_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:06 2005
         (191 letters)



>mm_chr12_65664910_65665500
          Length = 591

 Score =  269 bits (139), Expect = 8e-77
 Identities = 174/191 (91%), Gaps = 10/191 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   taactagctaaaggagttcatcaggaactgctaggttctgcgaaaaaccttctttcaata 60
           |||||||||||||||||||||||| ||||     ||     ||||||||||| |||||||
Sbjct: 211 taactagctaaaggagttcatcagtaact-----gt-----gaaaaaccttccttcaata 260

                                                                       
Query: 61  aggtaagatagtaatagtggatgttacttggcattgaccactgtcctccacacacttgca 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 aggtaagatagtaatagtggatgttacttggcattgacctctgtcctccacacacttgca 320

                                                                       
Query: 121 cacacgtgtatacaaatgcacttatacttaaggaagaggggaaagggaaaggagggaggg 180
           |||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||
Sbjct: 321 cacatgtgtatacaaatgcacatatacttaagggagaggggaaaggggaaggagggaggg 380

                      
Query: 181 aggaagagagg 191
           |||||||||||
Sbjct: 381 aggaagagagg 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)