BAC Information

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BAC

Clone NameMSMg01-068K06
Chromosome12 (Build37)
Map Location 31,093,792 - 31,094,292
singlet/doubletsinglet
Overlap genenone
Upstream geneMyt1l, LOC100043496, Pxdn, Tpo, Sntg2
Downstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068K06.T7 (MSMg01no068_k06.b1)MSMg01-068K06.TJ (MSMg01no068_k06.g1)
ACCAG293087AG293088
length687681
length of high quality
(start - end)
501 (63 - 563)409 (56 - 464)
definitionCHROMAT_FILE: MSMg01no068_k06.b1 PHD_FILE: MSMg01no068_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:08 2005CHROMAT_FILE: MSMg01no068_k06.g1 PHD_FILE: MSMg01no068_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAATCCGCGGAATTCAGCC
CTAAGCTCCCAGAATTCTGCTCACATTTTGCAGTCAGATATCATTCAAAA
ATATCTAACCTTTGGTGAAGACACTAATAGAAAAGCCATTAAAGATAGTC
ACTTGCAATTCCATTATCAAACTGCAAAAGAGATTTGTACTAAATCATAT
TTCTTCCAACATTAATCTCATTACAAGTTGGGTTTGAGGAAAAAGCCACT
TAACTGTGCCCCTGAACCAGCTGGAACCCTTGACTATTTTCCTTGGCATG
AATATACTATATACTGTTCTGGGGTATCATGACCTGTGTCTTACGATGGC
AGAATATTATGGGATTTTCTTGGGAGCAGAGCAATGTTAATTAAATAACC
CCTTAGGGATGCACATAATCCCATTGGAATTTCCCGTTGGATGTAGGATA
CATCACAAATAAAGTATTATAGAATTCATGGGAAGAACCTAAAAATATCG
TGACCCTTATAATTTATAAGTTTGCTCCATGCTAGACACTATTCATGTAT
CATCCCATGTGTGTCACCTCAGTAACAGTCCTTCATGTCAGTGTCAGCTT
GTACTTGCGAGAGAGAAGGAAATGAAAGTGAACAGCCCAGGAGCTTATTT
ATTTGCGTGACTGACTATGCGATAGATCATATTTGAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTTTGTTTAGCTCTGTACCCCAATTTTTAATAGGGTTATTTGAATT
TCTGGAGTCCAGTTTCTTGAGCTCTTTGTATATATTAGATGTTAGTCCCC
TGTCAGATTTAGGATTGTTAAAGATCCTTTCCAAATCTGTTTGTGGCCTT
TTTGTCTTATTGATAGTGTCTTTTACCTTACAAAAGCTTTGCAATTTTAT
GAGGTCCCATTTGTCAATTCTTGATCTTACAGCACATGCCGTTGCTGCTC
TGTTTAGGAATTATTCCCCTGTGCCCATATCTTCAGTAATATTCCCCAAT
TTTCTCCTCTATTAATTTCAGGGTCTCTGGTTTTATGTGGAGTTCCTTGA
TCCATTTAGACTTGAGCTTTGTACAAGGAGACAACGGATCAATTTGCATT
CTTCTACATGATAACCGCCAGTTGTACCAGCACCATTTGTTGAAAATTGC
TGTCCTTTTTCCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTG
ACCATAGGTGTGTGGATTGATTTCTGGGTCTTCAATTCTATTCCATTGAT
CTACCTGTCTTTTGCTGTACCAGCACCATGCAGCTTTTTATCACAATTTG
CTCTATAGCACACTTTTAAGTTATGCATGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_k06.b1 MSMg01no068_k06.b1 CHROMAT_FILE:
MSMg01no068_k06.b1 PHD_FILE: MSMg01no068_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:08 2005
         (501 letters)



>mm_chr12_31093592_31094492
          Length = 901

 Score =  961 bits (497), Expect = 0.0
 Identities = 500/501 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattctgctcacattttgcagtcagatatcattcaaaaatatctaacctttggtgaagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattctgctcacattttgcagtcagatatcattcaaaaatatctaacctttggtgaagac 260

                                                                       
Query: 61  actaatagaaaagccattaaagatagtcacttgcaattccattatcaaactgcaaaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaatagaaaagccattaaagatagtcacttgcaattccattatcaaactgcaaaagag 320

                                                                       
Query: 121 atttgtactaaatcatatttcttccaacattaatctcattacaagttgggtttgaggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgtactaaatcatatttcttccaacattaatctcattacaagttgggtttgaggaaa 380

                                                                       
Query: 181 aagccacttaactgtgcccctgaaccagctggaacccttgactattttccttggcatgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagccacttaactgtgcccctgaaccagctggaacccttgactattttccttggcatgaa 440

                                                                       
Query: 241 tatactatatactgttctggggtatcatgacctgtgtcttacgatggcagaatattatgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatactatatactgttctggggtatcatgacctgtgtcttacgatggcagaatattatgg 500

                                                                       
Query: 301 gattttcttgggagcagagcaatgttaattaaataaccccttagggatgcacataatccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 gattttcttgggagcagagcaatgttaattaaataaccccttagggatgcatataatccc 560

                                                                       
Query: 361 attggaatttcccgttggatgtaggatacatcacaaataaagtattatagaattcatggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attggaatttcccgttggatgtaggatacatcacaaataaagtattatagaattcatggg 620

                                                                       
Query: 421 aagaacctaaaaatatcgtgacccttataatttataagtttgctccatgctagacactat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagaacctaaaaatatcgtgacccttataatttataagtttgctccatgctagacactat 680

                                
Query: 481 tcatgtatcatcccatgtgtg 501
           |||||||||||||||||||||
Sbjct: 681 tcatgtatcatcccatgtgtg 701


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)