BAC Information

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BAC

Clone NameMSMg01-068N02
Chromosome12 (Build37)
Map Location 61,064,220 - 61,064,510
singlet/doubletsinglet
Overlap genenone
Upstream geneSec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
Downstream geneEG622488, LOC665665, Ppia-ps12_475.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068N02.T7 (MSMg01no068_n02.b1)MSMg01-068N02.TJ (MSMg01no068_n02.g1)
ACCAG293223AG293224
length689692
length of high quality
(start - end)
323 (54 - 376)289 (84 - 372)
definitionCHROMAT_FILE: MSMg01no068_n02.b1 PHD_FILE: MSMg01no068_n02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:23 2005CHROMAT_FILE: MSMg01no068_n02.g1 PHD_FILE: MSMg01no068_n02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTTAAATATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCAAACGATGAAAAAAATGCCTGAAAAGCCTTTAAAT
AAATGTACAAGATGCTTAATCACCAGGGAAATGCAAACCAAAACTGTTTA
CATCTCTCAGAATATCCAAGATTAATATAAGAAGTGACAGCTCATTTTGG
CAAGGATATGGAGTAAGAACACTTATCTACTGTTGGTGGGAGTGCAGACT
TGTAAGGCAATGATGGAAATCAGTGGTGGATCCTCCAGAAAATGGAAATC
AACCCTCCACAATATACTCCAAGAATATTTCATCCCACTACAGAGACAAA
GAAACATGTTCGTAGTTACTCTCTTCATGATATCCACAAACTAGGGACAG
GCTAGATGTGCATCAAAATAAAAATGGATAAAAAAACATATGGTACATTT
GCATCACCAAATGAAACCTTCAGTTCTGGAAATATGTTATATCTAATTAA
CTTGTTGGCCAATGGGGTCTCATGGAAATCCCTAACAACCCAAGTTATAG
CTAAGTCTGTAATCTCTGTAATCTAATGGTAAGGCCCCGTTGCTGAGGAT
GACTCCTAACAACTCACTGAACAGGGAGAATTCGAGCAGGTATCTACATG
CAGCCTTTGCTCCTTCATACTAGTGTTCATAGTGTCGAC
TTTTTTTAAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTGTGTTTAGATCA
CAGGATATTTTCATTTCTATGTCCAGCATAAAGGTAGCATGCCAGTAGTT
AGAGAATTTAGAACCAGAGAAGGATCTATAATAAATAATTGAATTAAGAC
AATTACTTGGCAATGCCTGAACATGAGGCAGTGTAATTCTTAGACCATAA
GGCCTTAACTAGTTCTCATGTCAATAGGAAACAATAAATAACCAGAAGTG
TCCAGTGTTCACAGTATCCTCTGCACTCAGGCTTACATTCCAGAGCGATA
CCTAGAAATTACGTAAATAAATTCTTTGACTATGCCCCCCCAACACTGAA
AGGGTATTGCTCCTGAAGAATATTTTCAGAGGCTCTATGAAGTGCTGTGG
CGCACACACAGATACACATATTCCTCAAAAGTCTCTGTTTAAAGAATTTT
TCAACTTTTATATCATGAGCCATTGAAGTTCTGTTTAGCAAACTTCTCCC
TGTGCCTACGAGTTCAAAGCTCTTTCCCACTTTTTCTTCTATTAAATTCA
GCGCATCTGGCTTTATGTTGAGGTTCTTGATCCACTTTGACTTATTATTT
GTACAAGGTGACTAATATGGGCCTATTTTCCATTCTTCTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_n02.g1 MSMg01no068_n02.g1 CHROMAT_FILE:
MSMg01no068_n02.g1 PHD_FILE: MSMg01no068_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:23 2005
         (289 letters)



>mm_chr12_61064020_61064711
          Length = 692

 Score =  524 bits (271), Expect = e-153
 Identities = 285/291 (97%), Gaps = 3/291 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttgtgtttagatcacaggatattttcatttctatgtccagcataaaggtagcatgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttgtgtttagatcacaggatattttcatttctatgtccagcataaaggtagcatgcc 260

                                                                       
Query: 61  agtagttagagaatttagaaccagagaaggatctataataaataattgaattaagacaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtagttagagaatttagaaccagagaaggatctataataaataattgaattaagacaat 320

                                                                       
Query: 121 tacttggcaatgcctgaacatgaggcagtgtaattcttagaccataaggccttaactagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacttggcaatgcctgaacatgaggcagtgtaattcttagaccataaggccttaactagt 380

                                                                       
Query: 181 tctcatgtcaataggaaacaataaat---aaccagaagtgtccagtgttcacagtatcct 237
           |||||||||||||||||||| | | |   |||||||||||||||||||||||||||||||
Sbjct: 381 tctcatgtcaataggaaacatttattgttaaccagaagtgtccagtgttcacagtatcct 440

                                                              
Query: 238 ctgcactcaggcttacattccagagcgatacctagaaattacgtaaataaa 288
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgcactcaggcttacattccagagcgatacctagaaattacgtaaataaa 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 692
Length adjustment: 9
Effective length of query: 280
Effective length of database: 683
Effective search space:   191240
Effective search space used:   191240
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)