CCTATTTCCAGAGGATCCGCGGAATTCCAGTAATTTACTTGAAAAATTTT
TGCCCTTCATGAAAGTGCCCTTTTCATGTTGAGATGACTGTTGCAATTTT
GGAACACCTTTTGTAAAAATGTAAAACATACTTGAGGTAATTCTGTATTA
AAAGTACATTATGTTTTAAGAAGCCTACAGGAAGACATTTAGGTCATCAG
CCGGTGCTTATTAAGAGGGTCTGGGCAACCAGACTCCTCTCCTCATTCCC
GTTTGTTCCTTGGCTTGTGATCTAAGCAGCCTTGCTCACATGTTTGTTAC
ATTGTGTTGTCTTGCTACAGACTCAATGCTACTGGTTTACTCGCCCCTGA
ACTGCACTTCCAACAATACTGAGCTTTTATAATCCTTTCCACTTTAATAG
TTAACTATATGAGGCGCTGCTGTTGTTGCTGTTGTGGCCCCGATTAACTA
TTGCAGCGTCCAGAGGCACGTTTTTAGAGTGATCTGATCATGACTGGTGT
TCACTTGCGGTATTGCTTTGCGTCTGCCCCCCTTTTCTTCGGTTTCTTAC
TTTTCCGCCGTTCTCCCGCCACTTTAGTACGCTTTCTGTACGTTTATCTT
CTATTTGCCCCTCTCCTCCGTTTCTTTTTTGCCATTTGCCCGCCTCCCCT
TTTATTGTTTTCCCCTTCCCCCCCCCCCC

NNTTTTCTTTTTTTTTNNTTTTTNCTTTTTTTCCCTTCTTTCCCCAATAC
NCNNNNTTACGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGCCGCAAAATTCATTCTTTATTGGTAGGTG
TCTCTTAATGGCATAATAAACCAATGATCACCGGTAGACATTAACACACC
AAATAGTAATAGGATTTCTTTTGTGACATGATGTAATATAAATACTATTT
GACACCCATTGTTTCAGAATCAAGAAATACTTGTGATATCATTTATCTAG
AATTTTAACAAACAAACAACGTAAAAAGACTTCCATGTTAAATATGATAG
TGATCATACTTGGGAAAGGAATGTTGTTTAGTACTGTTGGTTCCTCTTGG
TAAGACATCATGGATATTTTTTAGCCCCCCCCCCCCCATAGAATTAAGTA
TAATGTAAGATTTGTTGATGGAGGATCAACTAAAAGTAACTTTTATTGAC
GACCTATATCATTTAAAGATGTTTGAATTGAATTGTAAAATGTTATAGGA
CTTTCTGCCACGCGCTTCTTTCATTTTCACGTTTTTTCCCCGAACCGCCA
CATTCTTTCTACATGCGCCTTGACATTAACAATATACTTAACTTGTTTTT
AGGCCCTTATTTCACCGCTATTGTTACCAATCCCTATAGAACCGTTAACT
TTGCTCTTGCATATTTTTTTTTCTTTTGGACATAACTTTGTACTTAGCGA
CTCCAAGTACCTTGTGCATTTAGGCACTACAACG

Query= MSMg01no069_b08.b1 MSMg01no069_b08.b1 CHROMAT_FILE:
MSMg01no069_b08.b1 PHD_FILE: MSMg01no069_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:43 2005
         (253 letters)



>mm_chr12_39148732_39149384
          Length = 653

 Score =  443 bits (229), Expect = e-129
 Identities = 244/249 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatttttgcccttcatgaaagtgcccttttcatgttgagatgactgttgcaattttgga 60
           |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 aaatttttgcacttcatgaaagtgcccttttcatgttgagatgactgttggaattttgga 260

                                                                       
Query: 61  acaccttttgtaaaaatgtaaaacatacttgaggtaattctgtattaaaagtacattatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaccttttgtaaaaatgtaaaacatacttgaggtaattctgtattaaaagtacattatg 320

                                                                       
Query: 121 ttttaagaagcctacaggaagacatttaggtcatcagccggtgcttattaagagggtctg 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ttttaagaagcctacaggaagacatttaggtcatcagccggtgcttatcaagagggtctg 380

                                                                       
Query: 181 ggcaaccagactcctctcctcattcccgtttgttccttggcttgtgatctaagcagcctt 240
           |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ggcaaccagactcccctcctcattcccatttgttccttggcttgtgatctaagcagcctt 440

                    
Query: 241 gctcacatg 249
           |||||||||
Sbjct: 441 gctcacatg 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no069_b08.g1 MSMg01no069_b08.g1 CHROMAT_FILE:
MSMg01no069_b08.g1 PHD_FILE: MSMg01no069_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:44 2005
         (181 letters)



>mm_chr12_39263245_39263825
          Length = 581

 Score =  321 bits (166), Expect = 1e-92
 Identities = 175/178 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattctttattggtaggtgtctcttaatggcataataaaccaatgatcaccggtagaca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 378 tcattctttattggtaggtgtctcttaatggcataataaaccaatgatgaacggtagaca 319

                                                                       
Query: 61  ttaacacaccaaatagtaataggatttcttttgtgacatgatgtaatataaatactattt 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 318 ttaacacaccaaatagtaataggacttcttttgtgacatgatgtaatataaatactattt 259

                                                                     
Query: 121 gacacccattgtttcagaatcaagaaatacttgtgatatcatttatctagaattttaa 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gacacccattgtttcagaatcaagaaatacttgtgatatcatttatctagaattttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)