BAC Information

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BAC

Clone NameMSMg01-069B18
Chromosome12 (Build37)
Map Location 99,534,850 - 99,535,005
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
Downstream geneKcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069B18.T7 (MSMg01no069_b18.b1)MSMg01-069B18.TJ (MSMg01no069_b18.g1)
ACCAG293446AG293447
length694773
length of high quality
(start - end)
156 (131 - 286)62 (135 - 196)
definitionCHROMAT_FILE: MSMg01no069_b18.b1 PHD_FILE: MSMg01no069_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:46 2005CHROMAT_FILE: MSMg01no069_b18.g1 PHD_FILE: MSMg01no069_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:46 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCTTTTCAAAGAGGAGCCGCGGAATTCCTAAGTTACCTAAGACACTTTTG
ACATCTATTAGCAGGATAACTGCATGCCCTAGATCTATTTTCATGTTTAT
CCAGGCTAGGATTTCAATGGTCAGGATGCTAAACTCACTTGTCACACTTC
TCTGAATGTATGGAAGAAAAAACTTTATTTGAAGACTGGTAGATGACTAG
ATGAATAACTGTTGCTGGTAATGAGGTATAGTCTTACTGTTGGAGTATTT
AATAGTTCCTGCTTGGGCTGACTTCATAACTGGTGACATTTTCTACTTTC
CCTGACCCCGTGTTTTATTTTTTATTTTTATTTTTTTACCACGCACCTTC
CTCAATTAAATTTCCAATGCTATCCCAAAAGTCCCCTACACCTTCCCTAC
CCTCTCCCATTTCTATACTCACACTTTCCCATATTTTCGTCCCTGGTCGT
TCTCCTGTTTCGCCGCCTTATACTGTTTGCACTTACCATTGCCCTCTCTC
TTTCTTGCGTTCGCTTTTAACACTCTTCCTTCTCGCCCCATATTCTTCCT
TTTGTCTACTTATCCCGCGTTACCCGCCTCCTCCCTTTTTGTTTTTCCAT
CCCCTTTTACCTGCATTTCCCCTTTCCCCCCATTTTTTTTTTTTCCCCTT
TCCCTCCCTTTCCCTTTTCTTTTTTTCCCTCTTCCACCCTCCCC
TTTTTTTTTTCTTTTTTTTTTTTCCATTTTTTCCACTTTTTTCCCCCACC
CTNTTCTTCTATGATAGGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGCTTGGAAGGCCT
CAGCCTCAGGAGCAGCAGTCGCCACCTTGGTTCCGGGACTCCACCGAACT
TAGGAAATTAGTCTGAACAGGTGAGAGGGTGCACCACAGAATCGGACTGC
TTCTGGCACAGGTGGATCCTTAGAGCCGATGAGGCAGTACCCTTTTCAGG
CCGCATACAGCCGGCCACCATCCCGACCAGAGGACAGGTGTCTGCCTGGT
TGGTAAGTCCTCAGCCTCAGGATTTTTGGCCTCCATCTTGTTTCTGGGAC
TCCACTGAATTTTTTTTCTTACCCCGCCCCCCTGAGAGTCTGCACCACAG
AAGCTGACTGTTTCTGGGACGCGCCAAAGCAATACAGTTTTTGGGAAAGG
CCCTGTCTTGAGCCTTCTTCTCCGGCCTGAAGGAGGTCCAAACACTATAT
ATCTGCGCACCCTTCCTGCACCAGGTAATTTCGCCATTTGAGAGTGTTTT
GAGCACTGAACCTCCCATTACAGTTTCTGTTCTCCCAGTTTCTGCCGTCT
TTCGGCCTTTTTTTTCCCCTGCATGAACAATTCTTTAAATCAGCGTTCCA
CTTTTTTTTATTTTTTCTCCTGACATTTACCCGAATGGCGAATGTGTAAA
TCTTTGGAATTCTTCCCCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_b18.b1 MSMg01no069_b18.b1 CHROMAT_FILE:
MSMg01no069_b18.b1 PHD_FILE: MSMg01no069_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:46 2005
         (156 letters)



>mm_chr12_99534650_99535205
          Length = 556

 Score =  240 bits (124), Expect = 3e-68
 Identities = 148/156 (94%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactcacttgtcacacttctctgaatgtatggaagaaaaaactttatttgaagactggt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 aaactcacttgtcatacttctctgaatgtatggaagaaaaaactttatttgaagagtggt 260

                                                                       
Query: 61  agatgactagatgaataactgttgctggtaatgaggtatagtcttactgttggagtattt 120
           ||||||||||| ||||||||| |||||||||||| |||||||||| ||| ||||||||||
Sbjct: 261 agatgactagaagaataactgctgctggtaatgaagtatagtcttcctggtggagtattt 320

                                               
Query: 121 aatagttcctgcttgggctgacttcataactggtga 156
           || |||||||||||||||||||||||||||||||||
Sbjct: 321 aagagttcctgcttgggctgacttcataactggtga 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 156
Length of database: 556
Length adjustment: 8
Effective length of query: 148
Effective length of database: 548
Effective search space:    81104
Effective search space used:    81104
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)