BAC Information

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BAC

Clone NameMSMg01-069C04
Chromosome12 (Build37)
Map Location 7,551,713 - 7,551,877
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668380
Downstream geneEG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069C04.T7 (MSMg01no069_c04.b1)MSMg01-069C04.TJ (MSMg01no069_c04.g1)
ACCAG293466AG293467
length698694
length of high quality
(start - end)
165 (71 - 235)---
definitionCHROMAT_FILE: MSMg01no069_c04.b1 PHD_FILE: MSMg01no069_c04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:48 2005CHROMAT_FILE: MSMg01no069_c04.g1 PHD_FILE: MSMg01no069_c04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTTAGTACCCAAGCTTATTTCTGTAGCAATAGAGTTGGCTCCC
CATAACCCATAATCTTTGTGGCCCAAGAGACCTAGACAAGCTAATTAGTA
CCTGATAATGTTTGAGGCCCCTCCATGGTCAATTCTGCACATTTCCATCT
GGCTGAACTGTAGAGCAGTTAATAAGTTAGTGGATCGGCACCCAGAGAGA
GGTTGGTATGTGGGGCCCTATTCACTGAGTGAAGAAGGTGGAGAGACACT
GACTAGTCTTTAAACCAGTATGTGTGTTCTAGAAGCAGTTTGCCTTTAAG
TATTAAGGATATTTCTAAAATCACATCTATTATACAAAGAATACTCATGA
TGAAAAATGTATTTGATGCTAATAATTCAGATTTGTAAACTGTATCTTGC
TTTTTACTAACCTTCGAGTCCAACGTTTGGCTTTTGCTCTTTTTTATCTA
ACTTCCCTTGCTGGTTATCCCTTACGTGTTCTTGTCTTTTTGACTGTTTC
GATATTCCCTTATGCCGTTAATTTTGCCTTTGCCTTCTTATCTCTTGCTG
CCTTGCAGTTTATACTTTCTCGCCTAGTATTACCTTTTAAATCGTTCTTT
TTGCTATAAATTTAATGTTCCCTTGTTATTCCCATTTACCGTTTTCTC
CCTGGCGGCGCCTGGTTCCGAXXXXXXXXXXXXXXXXXXXXXTTCCCCGA
AATTAATATTAAGGAAGGAATTTCAGACAGAGAAAGAATAGAATCCATCA
CCCGAAATGGGTGCTTTTCTCAAGTAATGTGCCTGAGAAAATAATTGAAG
ATCAAGGTACCAAGAGTCTTGTGACGAAATCCATAGGAGTTGTAGGATAT
TTTTTTCTTGGTAAAGAAAGGATAGCATAGGCTTACGATTCTGTGACCTA
GTCGATATTTCACAGATAGTTCACAATTAGTCATGATAGAGACATTTACT
TCTTTATCGTATACTAATGCTACAAATTAGGATATTTTTTTATAACTCTC
CCCCCCCCCCCCCATTCGACCATCTTTCGGATTGCTTGTTGCCTTTTATA
ACAAGTACCTAAAAAGTGTGTGGGGTGCGTTTGTCTTTCCTTTACCTATC
CCTTCGCATTCACCGTTACTCTTTGCCTGCTTGTTATTCATTATCAAACA
CCCGAATTCATTTAACGTTACAAAATTTCCGCTCACTGATGGCTTCTCCC
TTTTCTTTGTCGTACCTGTTGATACACTCCTCCATTCTTCGATCCCTCCT
TGATTTTTTTAATGCCTCTCTCCATCTTTTTTTACCCCTATTCCCTTATT
TGTGTGTTTCTTAAAATTCGTTCCATTGTTCTGTTTTCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_c04.b1 MSMg01no069_c04.b1 CHROMAT_FILE:
MSMg01no069_c04.b1 PHD_FILE: MSMg01no069_c04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:48 2005
         (165 letters)



>mm_chr12_7551513_7552077
          Length = 565

 Score =  304 bits (157), Expect = 2e-87
 Identities = 163/165 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttatttctgtagcaatagagttggctccccataacccataatctttgtggcccaagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 365 cttatttctgtagcaatagagttggctccccataacccataatctttgtggcaaaagaga 306

                                                                       
Query: 61  cctagacaagctaattagtacctgataatgtttgaggcccctccatggtcaattctgcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cctagacaagctaattagtacctgataatgtttgaggcccctccatggtcaattctgcac 246

                                                        
Query: 121 atttccatctggctgaactgtagagcagttaataagttagtggat 165
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atttccatctggctgaactgtagagcagttaataagttagtggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)