BAC Information

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BAC

Clone NameMSMg01-069K12
Chromosome12 (Build37)
Map Location 95,177,285 - 95,177,527
singlet/doubletsinglet
Overlap genenone
Upstream gene2610022K04Rik-ps
Downstream geneEG633639, LOC217786
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069K12.T7 (MSMg01no069_k12.b1)MSMg01-069K12.TJ (MSMg01no069_k12.g1)
ACCAG293862AG293863
length710706
length of high quality
(start - end)
244 (70 - 313)38 (56 - 93)
definitionCHROMAT_FILE: MSMg01no069_k12.b1 PHD_FILE: MSMg01no069_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:28 2005CHROMAT_FILE: MSMg01no069_k12.g1 PHD_FILE: MSMg01no069_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAGAGGACCGCGGAATTC
ATTTATTTCCATTAGAAAGTGCTGTAGTACATTATAAATGATTTTTTTGG
ATGCAATAATACAGAGCCGTGTTTCTCCCTGTATATGAAGAGGATGGTGA
ATGTTTAGGTAGATTCTAGACAGTGGGAAGTGCATAAATTTAGGAACATG
TTTATTCCACACATACGTTTTAGCTGTCTCTCAGATGAGTACTAATTGCG
ATTATTAAAAGTATGAGTACATTTTTAAGCCTTGTGAAAATTGAATCTTC
ATTAATGATCCTTGTTTGCCTCAATACGAAGTCAGTGAAACATGTCATTG
TATATTATAATGGCTCTGAATATCTCAGTCAAATTTCTGGCATAACAATT
GGGAGTGTTATCTAACTTCACATGGATAGGTTAAGCCCGATGATTTTAAC
ACTATTGCTTATATTTTACGTCTAAGCTTTAAACCCATGTTTCCATACTA
CCCGATTATGCTTTTCCCATTAATGAATTGTTCCCGCTTTTCCACTGTTC
ACTGTTCCCATTGCCCTATTTCATTTCTGCTTTCGCTTAATATGTTAAAC
ATCCTATTTTCCTTTCTTTTTCCAATTAATAGGTATTTCGTGATTGGTTT
TTTTTTGTGGCTTGGTCTATCTTCCCTTTACTATTTTTTCCCTCTGAATC
CATTATAATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCATTTCCCAGCTTATGTTTTCTGGTCTACTTTCCTGTAAATGTAA
ATGAGAATTAGGAAGGAGGAGGGACAGAGCTTTCAATATTTACACTAATT
TGTAGAACAAGATGCCATTTTAAAGAGAAGGGAAAACCCCAAATGATCTG
AGGTTTATATTACCCCGTCAAGGCAGTGGTATTAACTGGCATCTTCTGCA
CACTCCAAGTCTTTCAGAAACAAAACCTTTCTGGAAATCTCAAGAGATTA
TTTTTTCTGGCTTCCTCTCTGGAAGGGCCCATTGCTGATTAACTGGGTCC
CCCGNGCAAGCCCACAATGTATTGATTCCTTCGGTTTGCCTGTTCCTCCC
TTATAACACATAAAAACTGTGGCGGTGGGGGTGGGTGTACGCACACACTT
TCTACTTTCCCTTCCCTTTCAAGCTTACTTTTTTGCACTCTTGTTTCCAT
TGCAAATCTCTCTCTTACATGATTTGCAGCTGTTTATTAGTTTACCTATT
CCCGTCTTGACTTTTATTTTCGTCCTTCTTTGTTCACTACTCCTTCCCTC
CTTCTCGTCCTTTTTCTTTTTCTATACAATGATCTCTATTATTCTTTCCC
CTTTTCCCTTTTTTATTTCAATTTTAAATTACCTTCCATTTCTAATTATC
CGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_k12.b1 MSMg01no069_k12.b1 CHROMAT_FILE:
MSMg01no069_k12.b1 PHD_FILE: MSMg01no069_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:28 2005
         (244 letters)



>mm_chr12_95177085_95177727
          Length = 643

 Score =  410 bits (212), Expect = e-119
 Identities = 236/244 (96%), Gaps = 1/244 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgctgtagtacattataaatgatttttttggatgcaataatacagagccgtgtttctccc 60
           |||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||
Sbjct: 201 tgctgtagtacattataaatga-ttttttggatgcaataatacagagttgtgtttctccc 259

                                                                       
Query: 61  tgtatatgaagaggatggtgaatgtttaggtagattctagacagtgggaagtgcataaat 120
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 260 tgtatatgaagaggctgttgaatgtttaggtagattctagacagtgggaagtgcagaaat 319

                                                                       
Query: 121 ttaggaacatgtttattccacacatacgttttagctgtctctcagatgagtactaattgc 180
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 320 ttagaaacatgtttattccacacatacgttttagctgtctctcagatgagtactaagtgc 379

                                                                       
Query: 181 gattattaaaagtatgagtacatttttaagccttgtgaaaattgaatcttcattaatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gattattaaaagtatgagtacatttttaagccttgtgaaaattgaatcttcattaatgat 439

               
Query: 241 cctt 244
           ||||
Sbjct: 440 cctt 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space:   148990
Effective search space used:   148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)