BAC Information

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BAC

Clone NameMSMg01-069P02
Chromosome12 (Build37)
Map Location 39,085,546 - 39,085,942
singlet/doubletsinglet
Overlap geneDgkb
Upstream geneA530016O06Rik, LOC100043139
Downstream geneLOC668824, LOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069P02.T7 (MSMg01no069_p02.b1)MSMg01-069P02.TJ (MSMg01no069_p02.g1)
ACCAG294081AG294082
length675799
length of high quality
(start - end)
382 (18 - 399)31 (132 - 162)
definitionCHROMAT_FILE: MSMg01no069_p02.b1 PHD_FILE: MSMg01no069_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:50 2005CHROMAT_FILE: MSMg01no069_p02.g1 PHD_FILE: MSMg01no069_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TACCTATTTCGAGAGGATCCGCGGAATTCCTTGTGTAACCTTGTGTGCAC
TTGACAGGGGCTACTCTCTGAACTGTCCCACTTGCATTTCCTCTGCACTG
CATTAGTTTCTGATATAAGATATGTATCCTTCATATCAATTTCAGACTAA
AACATTTGAGGATGGTATCATTCCTTCATTAAAAAGTATACTTACAACTT
TTATTATAGACAGTATGTTAAAAACTATTATACAGGCACGCGCACACACA
CACTCACACACACACATATCCATCTTTTATTCTCAATATGCCAAGAATTT
TATCAAGAATTATAGGCCTAAATTTTTCAAAACCTACTTTAATAAGGCTT
TTCAAATACTTCATCGAACCCTTCACTCAGACTTTTAGCTCACTGTCATA
AGGTAAGAGTAGAAAAGATGTAACTAGGACATGGGGATACGAACCTGTGT
AGAAGTAGTTTTTTGGTGTTATTCTAGTCATCCTTTGCTAGGATACCAGA
TAGCTAGATCAGTAATGATAACATATGACCTGTTTATCAGTTTCTTTTAT
TACTAATCATCGAGGGCGCCACTTCTTAACTTTAACATCCCTTTTCTTCC
CTTTTCCACTCTCCTTGATTTCTTTTTTACCCTTTTCCCCCCTTACATCT
GATGTTTGCCCTTTCTCCCCGCCCT
TTTTTCCTTTCTTTNNTNTTTTTTTTTTTTTTTCCCTNNTNNCCCCCCAC
ACTTCTTCTCCATGCTATGCGTAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTATACCC
CATTTTTAATAGAGTTATTTGATTGTCTCGGAGTCTAACTTCTTGAGTTC
CTTGTATATATTGACTATTAACCTGCTATCTGATGTATGACTGTTAAAAA
TCTTTTCCCTATCTGTTCTATTGACAGTGTCTTTTCCCTTACAGATTTGT
ACTCCTTTGAGTCCTTTTTTTTTTTTTCCTGTTTTTATTCCACTAGCCAC
CCTGTTTTCTGTTCACGAATTCCACTCCCTGTTTTTTTCGTTACTTACGC
TCTTCCCCATTTTCTTTCCTATCTTCTTCTCCGCCCCTGTCCTTTCCGCG
CCGTTTCCTTCACCTTTTTGTCTTCCCACCCCTTTTCCTTTCCTATTTTT
TTCGGATCTGCTTCCCCTCTTACTTTTCTTTTCTTTGTTTTTTTCGCCCA
TACTCCTCTTTTCCCATTCACGCCCCCTTTTCCCTCTCCCCCTTATTTTC
CCCCCTTCCTCCCTTCTCTTTTTCCCCTTCCCCTCCCCTTCTCCCCTTTC
TTTCTCTTTTTTTTTTCCCCTCTTTCACCACTTATTTTCCCCCTTCCTAC
CCCACATATCCTCTTCTTCCTTCCCCCTTTTTTTATTTCTTATATCACTT
TTTTTACTAACCACATATTTTATCTTTTTTTCTCTTATTCCCCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_p02.b1 MSMg01no069_p02.b1 CHROMAT_FILE:
MSMg01no069_p02.b1 PHD_FILE: MSMg01no069_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:50 2005
         (382 letters)



>mm_chr12_39085524_39086305
          Length = 782

 Score =  656 bits (339), Expect = 0.0
 Identities = 373/397 (93%), Gaps = 20/397 (5%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattccttgtgtaaccttgtgtgcacttgacaggggctactctctgaactgtcccact 65
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 ggaattccttgtggaaccttgtgtgcacttgacaggggctactctctgaactgtcccact 360

                                                                       
Query: 66  tgcatttcctctgcactgcattagtttctgatataagatatgtatccttcatatcaattt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgcatttcctctgcactgcattagtttctgatataagatatgtatccttcatatcaattt 300

                                                                       
Query: 126 cagactaaaacatttgaggatggtatcattccttcattaaaaagtatacttacaactttt 185
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cagactaaaacatttggggatggtatcattccttcattaaaaagtatacttacaactttt 240

                                                                       
Query: 186 attatagacagtatgttaaaaactattatacaggcacgcg-------------------- 225
           ||||||||||| ||||||||||||||||||||||||||||                    
Sbjct: 239 attatagacagcatgttaaaaactattatacaggcacgcgcgcgcgcacacacacacaca 180

                                                                       
Query: 226 cacacacacactcacacacacacatatccatcttttattctcaatatgccaagaatttta 285
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cacacacacacacacacacacacatatccatcttttattctcaatatgccaagaatttta 120

                                                                       
Query: 286 tcaagaattataggcctaaatttttcaaaacctactttaataaggcttttcaaatacttc 345
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 tcaagaattataggcctaaatttttcaaaacctactttaataaggcttttcaaatacttc 60

                                                
Query: 346 atcgaacccttcactcagacttttagctcactgtcat 382
           |||||||||||||||||||||||||||||||||||||
Sbjct: 59  atcgaacccttcactcagacttttagctcactgtcat 23


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)