BAC Information

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BAC

Clone NameMSMg01-070B06
Chromosome12 (Build37)
Map Location 107,140,166 - 107,140,662
singlet/doubletsinglet
Overlap genenone
Upstream gene4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola
Downstream geneVrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik, LOC100041191, LOC100040451, LOC673604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070B06.T7 (MSMg01no070_b06.b1)MSMg01-070B06.TJ (MSMg01no070_b06.g1)
ACCAG294185AG294186
length689718
length of high quality
(start - end)
500 (76 - 575)---
definitionCHROMAT_FILE: MSMg01no070_b06.b1 PHD_FILE: MSMg01no070_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:01 2005CHROMAT_FILE: MSMg01no070_b06.g1 PHD_FILE: MSMg01no070_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTAAATACCTGTATTGGTGATTTTTACCAGTAAATTTTTATTTG
AATATTTTATATATTACCTATGCAAAAATAAATTTCTTGTGTTAAAAAAA
ATAGTCACAGCTGGAAAAAGTACAAGAAACTCTAGCTTAAATCTTCACCA
GTTTCCTTCGCCAAGACATGTCGTGCCGTCCAGGATATTCAGTGCACAGA
ATAAAATCAAGGAGAACGTTCTTGCCTTCTGTCCTTAGTCCACTTGAGAC
AGAAAGTGATTTTTACAGGTATCTTTAATTCCTGGAAACATAACATTTTG
TGCCAGTTTAACTAAGTAAGAAAGCAAGGAAATTCAGCCTTTGAGATCTG
TCCCATCCACTCCCCCACCCCCCACTTCTCTGCTTCAAGGAGGAGTGGAG
GAGGCATGAATAATAAATATGTAGATAAGAGAATGAAACTGGGAAATCAA
TTTACTGCAAAGTATTTGCATATTTTATTAAAAGAAACTGTGTCTGAGAT
CCATAACAGGGCGTGATGATTTCTGCTTTGATTTGATTTGTGTGCGCCAC
GCCTGTGGGAAAAGTGACAGGCTGCAGTCGTGTGAGCAGGAAAGGGTTTT
TTTTTTTTTTTAATTTCCATGATGGAAAACGGGCATATT
CCGATGCAGTGGGAGGCCTGGCGGCCGCCTGGTTCTAAAAAAGAGGTGAC
ACTATAAGAATTTCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCGCGGGG
CCCCCCCCCCCCCCCCTTCCCCCCATTACTTCCCCCCGNGNTTTTCCTTC
CNTCTTTTTCTCTTTTTTTCTNCCCCCCCAACAGCNNNAAATNAAAAGGT
GCAACCACCCAGGCCAAAATTAAATTAAACAATTAAAATTTAACCTAATT
CCCACGTAAATTTGGTTAACCGAAACTTCCAAGGGGAAAACCTCCCCTTA
AACCCCCCCTAAATGAAACCCCCCGAAGCCCCCAGAAAAAAACCCCCCCC
ATGGAACCCCCCGGCCCCCCCCTTAACCACCCTTTGAAAAAAATGGGCCT
TATGGGCCCAAAAAAACCTCCCCCCCTCCTTTTNNNNNNNACNAAGGGCC
CTTAATGGGAGGACCCCTAAATTTAATTATCCCCAGAAGGGGCCCCCCCC
CCCCCCCCANAAAAACAATAAAATCTCGGTGTTGTTTTTAAAAAAAAACC
CCCTCCCGGCGGTTGGAGGAAACCTTCTTTCCACAAATCTTTTTTTTTCC
AAAACCCCCCCCCCCCTAATAAAGCGGCCCCCCCCCCCTTTTTCCCCCCG
CGAAAAAAACACACCTTCCTCTTTTTCTTGCAACAAACAATAATCTATTC
CTTCCCGCCCCCCCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_b06.b1 MSMg01no070_b06.b1 CHROMAT_FILE:
MSMg01no070_b06.b1 PHD_FILE: MSMg01no070_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:01 2005
         (500 letters)



>mm_chr12_107139966_107140862
          Length = 897

 Score =  948 bits (490), Expect = 0.0
 Identities = 497/500 (99%), Gaps = 3/500 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttaccagtaaatttttatttgaatattttatatattacctatgcaaaaataaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttttaccagtaaatttttatttgaatattttatatattacctatgcaaaaataaattt 260

                                                                       
Query: 61  cttgtgttaaaaaaaatagtcacagctggaaaaagtacaagaaactctagcttaaatctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgtgttaaaaaaaatagtcacagctggaaaaagtacaagaaactctagcttaaatctt 320

                                                                       
Query: 121 caccagtttccttcgccaagacatgtcgtgccgtccaggatattcagtgcacagaataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caccagtttccttcgccaagacatgtcgtgccgtccaggatattcagtgcacagaataaa 380

                                                                       
Query: 181 atcaaggagaacgttcttgccttctgtccttagtccacttgagacagaaagtgattttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaaggagaacgttcttgccttctgtccttagtccacttgagacagaaagtgattttta 440

                                                                       
Query: 241 caggtatctttaattcctggaaacataacattttgtgccagtttaactaagtaagaaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggtatctttaattcctggaaacataacattttgtgccagtttaactaagtaagaaagc 500

                                                                       
Query: 301 aaggaaattcagcctttgagatctgtcccatccactcccccaccccccacttctctgctt 360
           ||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||
Sbjct: 501 aaggaaattcagcctttgagatctgtcccatccac-ccccc--cccccacttctctgctt 557

                                                                       
Query: 361 caaggaggagtggaggaggcatgaataataaatatgtagataagagaatgaaactgggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 caaggaggagtggaggaggcatgaataataaatatgtagataagagaatgaaactgggaa 617

                                                                       
Query: 421 atcaatttactgcaaagtatttgcatattttattaaaagaaactgtgtctgagatccata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atcaatttactgcaaagtatttgcatattttattaaaagaaactgtgtctgagatccata 677

                               
Query: 481 acagggcgtgatgatttctg 500
           ||||||||||||||||||||
Sbjct: 678 acagggcgtgatgatttctg 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 897
Length adjustment: 10
Effective length of query: 490
Effective length of database: 887
Effective search space:   434630
Effective search space used:   434630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)