BAC Information

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BAC

Clone NameMSMg01-070H08
Chromosome12 (Build37)
Map Location 113,275,771 - 113,276,069
singlet/doubletsinglet
Overlap geneTdrd9
Upstream geneRcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943
Downstream geneA530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070H08.T7 (MSMg01no070_h08.b1)MSMg01-070H08.TJ (MSMg01no070_h08.g1)
ACCAG294475AG294476
length680677
length of high quality
(start - end)
299 (69 - 367)241 (69 - 309)
definitionCHROMAT_FILE: MSMg01no070_h08.b1 PHD_FILE: MSMg01no070_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:32 2005CHROMAT_FILE: MSMg01no070_h08.g1 PHD_FILE: MSMg01no070_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGG
AATTCCAGGATAGACCTGGCTCCTCCTTGTGTTGATCGGTAGGCTCGAAG
TCACAGACAGCATCAGGCACAAATGTCAGCAGTCAGACTTGAACAAAGAC
AGACAGGATCTTTGAAGGCTAAGCCCACTCTTCTTCCAAGAGGTCAGAGC
AAAGCTTGGGCTGATGAAATGGCTTTGCTGGTAAAGTGCCTGCACAGACA
TGAGGACCTGGGTCCTCGTGGGTCCCCAAAACCCATGGGACAAGCTGGAG
GTAACACCTACCGCCTCGGTAGATGCAGCCGCTTCCTGGAGCGCACTGGC
CAGGCCAGCTGACCGAAGGGATGAGCTCCAGGTTCACTGAGTTACAAAGT
TACAAAGACAGCTCATCAACTGCTCATCAACCACACACAGCCACACCTCT
AACTAACAAGTACATGGACCACAGACAGCATACAACCCAGGAAAAGAACC
CACAACTCCACACACTAGATGGATCTGGAGCGCCTGTGTCTTTCCCTCAC
CTCACCTGGTCTTAATCACCAGATCCTTTCTGAAATCCCAATTGATTTCT
CCGAATAATAGAGTGTGTTTAATCTTTGAAGAATAATCATTATTGCAGTC
TTGACCTCAATCTTTGTGAGTTCTAGGCCA
ACGATGCAGAGAGAGGCCTGGAGGCCGCCTGGCTCAAACAAAAGGTGAAC
TATAGAATTTTCTGCGGAATTCCTAGGACCCACATGGCATTTAACAACTG
TCTATAACTCCAGTTCAGGGATATCTGATACCCTCTACTGGTCTTGGAAG
CCTCCTGCACATACATGGCACACATGTATACATACATGCAGGGCAGATAC
TCATATACATAAAGTAAAGAGATGTTAAGAGAGAGAAAAAAGGCAAACAG
AAACATCCTCAGTCTCTGGGCACAACATCACTGTTACTGATGGAGCCCGA
GCCAGCATAGTCTTTTTCCTCTGCAAAGCAACCTAAGTGGATGCTGCTGC
GCCTGTCATTAGATACATTACTTTGTCTCCATGCATGCTGCCCTGATGCT
GGACCGGACCACTGCACTCATCTGCTCAGCGCTCATCAGAGCTCCCCCTA
TCTAATCTAACTAAAGGAACTCCATCTGTTACCTGTCTCTTTACCTGGTT
CAAGGTTCAAAATGCTTATCCATTTCCTGAAAATAGAGATCCTGATCAGA
CTTCAGCTGTGGCATCAGTACCTGGATTCGCCCCGGGTCTTATAGCTGGA
ATTGACACCGTTTATCCCCCTTTTTTATGACTCGTTATGTCTTTCGCACC
CCGAAGCATAGCTGTTTGTCTGTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_h08.b1 MSMg01no070_h08.b1 CHROMAT_FILE:
MSMg01no070_h08.b1 PHD_FILE: MSMg01no070_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:32 2005
         (299 letters)



>mm_chr12_113275731_113276429
          Length = 699

 Score =  578 bits (299), Expect = e-169
 Identities = 299/299 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctcctccttgtgttgatcggtaggctcgaagtcacagacagcatcaggcacaaatgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gctcctccttgtgttgatcggtaggctcgaagtcacagacagcatcaggcacaaatgtca 280

                                                                       
Query: 61  gcagtcagacttgaacaaagacagacaggatctttgaaggctaagcccactcttcttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gcagtcagacttgaacaaagacagacaggatctttgaaggctaagcccactcttcttcca 220

                                                                       
Query: 121 agaggtcagagcaaagcttgggctgatgaaatggctttgctggtaaagtgcctgcacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 agaggtcagagcaaagcttgggctgatgaaatggctttgctggtaaagtgcctgcacaga 160

                                                                       
Query: 181 catgaggacctgggtcctcgtgggtccccaaaacccatgggacaagctggaggtaacacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 catgaggacctgggtcctcgtgggtccccaaaacccatgggacaagctggaggtaacacc 100

                                                                      
Query: 241 taccgcctcggtagatgcagccgcttcctggagcgcactggccaggccagctgaccgaa 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  taccgcctcggtagatgcagccgcttcctggagcgcactggccaggccagctgaccgaa 41


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)