BAC Information

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BAC

Clone NameMSMg01-070M06
Chromosome12 (Build37)
Map Location 37,182,048 - 37,182,335
singlet/doubletsinglet
Overlap gene4930579E17Rik
Upstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1
Downstream geneLOC638858, Meox2, A530016O06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070M06.T7 (MSMg01no070_m06.b1)MSMg01-070M06.TJ (MSMg01no070_m06.g1)
ACCAG294709AG294710
length742675
length of high quality
(start - end)
75 (107 - 181)288 (72 - 359)
definitionCHROMAT_FILE: MSMg01no070_m06.b1 PHD_FILE: MSMg01no070_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:56 2005CHROMAT_FILE: MSMg01no070_m06.g1 PHD_FILE: MSMg01no070_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAACGAAACGCCCGTTTGCGGGGCCTATCCCTTCCGCTCGTCCCCTGNN
CCCTCACGAGCAAAANNGCNGGNTNNNNNNNNNTTTTTNNNNNNNNGGGA
GAGGATCCGCGGAATTCTTTTGGCTAAAGAGCTCAGATATTTGAAAGCAG
AATCTCTAACACATTTAATGTTCTGGACTAGAGCATCTTCCCGGAGTGTG
CTGGAGCCCTAATAGCGCCTGCGTTTGTGAGAATGCTCAATGCACGATCC
ATACCCTTCTGCCCTATGCAGTTCTATACTAGTAGAAGCGATTCCGCGAC
CAATGAAGATGCCACAGAGTAAGACATCACCTGACCCAGACTTTACTGCC
CTATCCTATGACCTAGTCTCAGGTCAACCCGATACGCTTGAAGGGAAAGC
TGATAGAACCGAATGACGTTAGAAATTCTTATACCAACACATAGAAATTA
AAAAATATATATTAACAAATTCATGATTCATTAAGGCACAATCACCATTT
ACATGATGCTCTGAAAGAAAAAAAATCACACTTAACTAACATCAATGGTC
ACCATGACAACAGTCAAACAGATGTTTTCCCATGTAACAAAAGTGCTGTA
TGCTATAAAATAAGCATCAAAGATCTGAAAACATACATGTTTTTTCTATA
ATAGAACTACACACAAGTCCAAAGCCAGTGCTATCATGAAGGTTTCTAAA
TTAAATTCTTACTAACAAATATTAAGATATTAAATATCTACN
CATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCATGGGTGGTATTTTTTCCCCTCCCCAA
CACTAGCTATTACACTTCGTTCTTTCTCTTTGTGTTTGTGTGACTTCCAA
GAAGTTAGTTTCTGGCTGTTCTATATGTCACTATTTACTCTTCAGTTTCC
TTGAGAATTCTCTTCTGCATTTAATTTTGTAGTTTGAATGCAATGTGGCT
AAGTAAAGATTTTTGCTATTTACCACCTGGATCTTTTGTTTACTATATGA
TGTTGTTTGGGAGATTATAATTGCATTGATTGCTTTCTGTGGACCTATTC
TTTCTTCATCATGTTTGCATTTTTGTTATCTATTTTATATGGTAATATCT
TCATTTGAGGCAAGGTCTCACTCAGTGTGGTCTTGAACTCATGGTAATTC
TCTTACCCCAGTCGCTTTTGTTTTTTTTTTTTCTTATAGAATTTTTAAAA
TTTATTTGTTTGTTTGTTTGTTTATTGTAGAGAAGTCCACAAATGAGTAG
AGGGTAGAGACAACTCCTGGGAGCTGGTTCTCTCCATCCACTGTGTAGGC
TGCAGATATTGAAGTCCTGTGTGGTTTGCCAGCAGGTGATTCTCCCCTTT
GAATCCCTTCCGCATCGTATGCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_m06.g1 MSMg01no070_m06.g1 CHROMAT_FILE:
MSMg01no070_m06.g1 PHD_FILE: MSMg01no070_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:57 2005
         (288 letters)



>mm_chr12_37181848_37182535
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgggtggtattttttcccctccccaacactagctattacacttcgttctttctcttt 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tcatgggtggtattttttcccctccccaacactagctattacactttgttctttctcttt 260

                                                                       
Query: 61  gtgtttgtgtgacttccaagaagttagtttctggctgttctatatgtcactatttactct 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtttgtgtgacttccgagaagttagtttctggctgttctatatgtcactatttactct 320

                                                                       
Query: 121 tcagtttccttgagaattctcttctgcatttaattttgtagtttgaatgcaatgtggcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagtttccttgagaattctcttctgcatttaattttgtagtttgaatgcaatgtggcta 380

                                                                       
Query: 181 agtaaagatttttgctatttaccacctggatcttttgtttactatatgatgttgtttggg 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaaagatttttgctatttaccatctggatcttttgtttactatatgatgttgtttggg 440

                                                           
Query: 241 agattataattgcattgattgctttctgtggacctattctttcttcat 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agattataattgcattgattgctttctgtggacctattctttcttcat 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)