BAC Information

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BAC

Clone NameMSMg01-070O04
Chromosome12 (Build37)
Map Location 98,674,912 - 98,675,090
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628277
Downstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070O04.T7 (MSMg01no070_o04.b1)MSMg01-070O04.TJ (MSMg01no070_o04.g1)
ACCAG294800AG294801
length7321,424
length of high quality
(start - end)
179 (527 - 705)---
definitionCHROMAT_FILE: MSMg01no070_o04.b1 PHD_FILE: MSMg01no070_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:06 2005CHROMAT_FILE: MSMg01no070_o04.g1 PHD_FILE: MSMg01no070_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAAGAGAAAATTTTTTGATAGTTTTACATTTATAAGATTACAAAAATC
ACTCGGNNNNNNNNACAGTACNTTGNNNNTTTTNNNNNNNNNNTAGGGAG
AGGATCCGCGGAATTCACCACTGGCCAAGATTGTGCCTGCACGTTCCCAC
CTGCTAGCCTCCCTCCCTTCAACCCAGTCTAGGGTGCAATGGGCCTGACT
ACCCCCAGTGGGGGAGAAGTTGTAACTGGTTATCATGATCCGCATATTGA
GCTGACCTACGAATATAAATCTATTTTTGCTGCTACTTCATAAGTGCACT
TTTGTAACTGTTATGAATTGTAGTGTACATATGCCAGATATCTAACATGA
AATCTCTATGACAGGATCACTTGACCCCCCTCTAAAGTATCCAACCCACG
CATTGAGAACTACTCATCTAGATTGCTTCAAAAGACTTCATACACTTTTC
ATAAATAATGTAGAGTATTACATCGAGACAGGAAAATATGTAAAATAGAC
TTTTGACATAAAAGTAAAGCAGAGTAAGAAGCCAGAAAGCTCTGAGGGCA
TCTTAGTAGTCTAAACCTTTTGTAGGATCTTGAATCCAAACAAATTATAA
AATTGTGATCTCTGAAAATTTGTCTTAAAATAAACCTTTTTTTCTTTTTC
AAAATGTTAATATTGCAGAAAATACCTGCCATAGTCCTTGCTGGGGCATC
TTGGAGTAGTTTACAGATGGGGATGGATAGAG
CATATAAGATACCATAAAATATACTGTACACCTTTGTCTTGCGCACTCAC
ACAACACAGATACTACCCCTTCATTATGTCGCNTCATGTCATACACCGTA
TACTATTCTTACTATAATATACACATCATCTGCTAATAATCATACCGCAC
TTCCCAACCCATACCACTTCACACACATATAAATATATAATTAAAATATC
ATTTTTGACATATATCTCCACACAAACTCTACCCATCGTTACCTATCCAC
AACCGCCATCACACCTATTTTTTCTATACCCTCTCTTCCCGTCTGTTTCT
TATTATCGAACACAAAACTCTTATATTGACTTTACCTCTTCTCACACTCC
GATCCTCTTCTTTATATTTCCCGGCGCTCCACTCCCATCCCTTATCGTAA
TATCATAATCTCGCGTCCCACACCTCACATCCACCACCTTTTTCACATCT
TCCGTTCTCCGATGCACACATTACACATGTTATACGTATTATTTTCACCT
TAATATAATACACTCCATCCTTATCTTTCAATATATTTCCCTCGCCCTTC
GCTTCACCACACACCATTCTCATCCCCCCTACCACACCTACTACCTTATG
TTAAAATATCATCATAATACACGTATCGTCTAACCAATATATCTTTTCTA
TCTCACACCACCTTCACTTTACCATTTTCACACCACATTTTAATATATTA
CTTTATTAACACACACACGCACATTACGCTATATTATTAAATACACAGTC
TCTATATTATCGAATAACTATATTGTGATAACATACACCATGTTCAATGA
TATCACCCTCTCTCCGCCGCACTCTTTCGACTATCATCCATATTACTCTA
TACTATTACGCATAACATCACGCGCACACGATTGAGAATTTATATAGAGG
AATCACGTCGAATATAATCACCCACCAGCGCCCACACACGCCCTACGCAC
ATATAATATATACNGCGCGAGAATTATAGAGAAAATATGATATCACCCCG
CTNTTCTCCTTACCCGCATATTAACTTGCATCACACATAATAATGGTATA
TGAATATTANCTCCGCGTCAACCACACACCATTTACCCACAATACATCCG
CCGCCCTGTCCAACACTNCACCTCTATCGTGTATATTACACACATCTCGC
TCTGCACCACGNTATGTTCTATATATACCCTCTATAATGAGTCTCACGTA
CTGCACACTACACCTACTTATCTTGTCTCTCATCACTCCGCACTCTATAN
TNATTTTTATCTGTGACAANCACTATACACTATATCTTATNCAGAGCGAN
CATACCCCTCTCTCNTACCTCTATCATACACAGAACATGATTCTGCTCTC
TGTACCCTGATAATATCTCATACCGCACACTNANTGCCGCACATATTAAT
ACGACACACGCGTCTCACACANAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_o04.b1 MSMg01no070_o04.b1 CHROMAT_FILE:
MSMg01no070_o04.b1 PHD_FILE: MSMg01no070_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:06 2005
         (179 letters)



>mm_chr12_98674712_98675290
          Length = 579

 Score =  333 bits (172), Expect = 5e-96
 Identities = 178/180 (98%), Gaps = 2/180 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaagccagaaagctctgagggcatcttagta-gtctaaaccttttgtaggatcttgaat 59
           |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 379 agaagccagaaagctctgagggcatcttagtaggt-taaaccttttgtaggatcttgaat 321

                                                                       
Query: 60  ccaaacaaattataaaattgtgatctctgaaaatttgtcttaaaataaacctttttttct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccaaacaaattataaaattgtgatctctgaaaatttgtcttaaaataaacctttttttct 261

                                                                       
Query: 120 ttttcaaaatgttaatattgcagaaaatacctgccatagtccttgctggggcatcttgga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ttttcaaaatgttaatattgcagaaaatacctgccatagtccttgctggggcatcttgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)