BAC Information

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BAC

Clone NameMSMg01-071C18
Chromosome12 (Build37)
Map Location 54,927,640 - 55,079,114
singlet/doubletdoublet
Overlap geneNpas3
Upstream geneAkap6
Downstream geneEgln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071C18.T7 (MSMg01no071_c18.b1)MSMg01-071C18.TJ (MSMg01no071_c18.g1)
ACCAG295020AG295021
length722709
length of high quality
(start - end)
257 (45 - 301)109 (72 - 180)
definitionCHROMAT_FILE: MSMg01no071_c18.b1 PHD_FILE: MSMg01no071_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:29 2005CHROMAT_FILE: MSMg01no071_c18.g1 PHD_FILE: MSMg01no071_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,078,860 - 55,079,114)(54,927,640 - 54,927,748)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACAGAATCCGCGGAAT
TCACTTCTGCCTCTCCTGGCGTCCTGTGATATTATTCATCAGGCTTCGGG
GTGGGACAATGTTTCTTTTCCATTTGAAATAGCTAGGATGTATCTTTTAG
GAGGCTGATTAACTTTCTATTCATGAACACCCACCTTTCTCCAGGGGACA
ATGCCTGACTCACACACTCAGGGGGTTCGCCTTGCTGCATTTGTAGAAAT
AAAGCTGCTCTTTTGGGGAAGAGAAGAGAGCTTCAGTCACGTGTCAAAGG
CAGGCGGAATACAAAGAGTATAGAGATGCCAGTGCTCCGGAGAAATGTCC
ACTAATTCAGTCAGTGAACACAGAGGCAGTGCTCTCTCATTTAGACTTTT
TAATCTACTCCCCATCAGTAAGGGATCTCAGCTCATTTCTCTGTATACCT
ACAGACCATTGCTCTTTACATTGTAACGAGAACAGATGCTACATTGTGAG
CGCTCCTGTCCCAAACGAGCAAGGTACCATATAAGTTTGTCTTCTCCAAT
GAATGGTCCCTAATTCTCAGCTAATCCCTTATTAAAGGAACTGTCTGCCC
CATTCTCCCCCAATTTATTTTTATCAGGGCGTTAACCCTGGCTCTGTACT
GACCTTCCTAAATGTTAGTTTTAATCTACTTTGTCTCTTCTAATGTTCTA
ATTTGAATCTCTAATTGTTTGG
ATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGGTGATCTCTTTCCCCTTCCACACTGG
AATAAAGGAAGCCCTAATTTCACGGTGGTAATAGACATGTGAATTGCCCT
TATGATGGTCTCCTAGTAAGGTTTTACTCTATAGAAGTCTGGCTGTGGTG
GAATGCGCTTTATAGGGAAAGCAGAGACAAATCTCTGATAAATAAAAATC
CATTTATCCCAATGCATCAAACACCCATACCCCTCCGTCATGAAACTGCT
TAGTTCCCTACTCTGTAGAGGTACCAACCTCATCCCTTGATAAACACTAT
GAGGTGTATCCAGCTTTGGGGGCTAAGAAACAGTGGCTCTAACTGTCTGC
TTTATGTGAAGTCAGGTGATATAAATTATAATTACAGGCATTATTATTCC
TAGACACTGTAGCTCCTGACTCCTGATTATGAACCTCGCTCTCTGTTGTC
TGTCTCACAAATCTAACTGGAATGTGATAAAGGAACTCTCCCATAACATC
CCGATTGCATGCCCATGACATGTTCCCCACATTAAGAATATAGTTTTGAT
ATATCTTATCCCTGCTATATCTTTATGATGATGTTTTTTAGAAAATCGAA
CCACAGTTAATGGTCCTCTGCCTGACCATAAGAACGTCGCAGTTTTCTTA
CTCGCTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_c18.b1 MSMg01no071_c18.b1 CHROMAT_FILE:
MSMg01no071_c18.b1 PHD_FILE: MSMg01no071_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:29 2005
         (257 letters)



>mm_chr12_55078658_55079314
          Length = 657

 Score =  485 bits (251), Expect = e-142
 Identities = 254/255 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcacttctgcctctcctggcgtcctgtgatattattcatcaggcttcggggtggga 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gaattcacttctgcctctcctggcgtcctgtgatattattcatcaggcttcggggtggga 398

                                                                       
Query: 63  caatgtttcttttccatttgaaatagctaggatgtatcttttaggaggctgattaacttt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 caatgtttcttttccatttgaaatagctaggatgtatcttttaggaggctgattaacttt 338

                                                                       
Query: 123 ctattcatgaacacccacctttctccaggggacaatgcctgactcacacactcagggggt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctattcatgaacacccacctttctccaggggacaatgcctgactcacacactcagggggt 278

                                                                       
Query: 183 tcgccttgctgcatttgtagaaataaagctgctcttttggggaagagaagagagcttcag 242
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 277 tcgccttgctgcatttgtagaaataaagcagctcttttggggaagagaagagagcttcag 218

                          
Query: 243 tcacgtgtcaaaggc 257
           |||||||||||||||
Sbjct: 217 tcacgtgtcaaaggc 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space:   160704
Effective search space used:   160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no071_c18.g1 MSMg01no071_c18.g1 CHROMAT_FILE:
MSMg01no071_c18.g1 PHD_FILE: MSMg01no071_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:29 2005
         (109 letters)



>mm_chr12_54927440_54927948
          Length = 509

 Score =  203 bits (105), Expect = 2e-57
 Identities = 108/109 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggtgatctctttccccttccacactggaataaaggaagccctaatttcacggtggtaa 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 agggtgatctctttccccttccacactggaaaaaaggaagccctaatttcacggtggtaa 260

                                                            
Query: 61  tagacatgtgaattgcccttatgatggtctcctagtaaggttttactct 109
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagacatgtgaattgcccttatgatggtctcctagtaaggttttactct 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space:    50601
Effective search space used:    50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)