BAC Information

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BAC

Clone NameMSMg01-071D01
Chromosome12 (Build37)
Map Location 9,353,765 - 9,354,090
singlet/doubletsinglet
Overlap genenone
Upstream geneBC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32
Downstream geneLOC633030, LOC100042238, Osr1, LOC382567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071D01.T7 (MSMg01no071_d01.b1)MSMg01-071D01.TJ (MSMg01no071_d01.g1)
ACCAG295034AG295035
length699697
length of high quality
(start - end)
402 (53 - 454)322 (76 - 397)
definitionCHROMAT_FILE: MSMg01no071_d01.b1 PHD_FILE: MSMg01no071_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:30 2005CHROMAT_FILE: MSMg01no071_d01.g1 PHD_FILE: MSMg01no071_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGAGAATCCGCGG
AATTCTTTGTTCTCCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGTTGGTCTT
TTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTC
TGTTCAGGAATCTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTATATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCA
TTTCTTCTACCTGACAACAACCATTTGTGCCAGCACCTATTGTTGAAAAT
GCTGTCTTTCTTCTATTGGATGGTTTTAGCTTTCTTGTCAAATATCAAGT
GACCATAGGTGTGTTGGTTTCATTTCTGGGTCTCCCCCTCTATCCCATTG
TTCTACTTGTCTTGTCTCCATTCCAGTATCACGCCGTCTTCTATTACTAT
TTGCCCTGTACTAAACTTTTTAGTCCCTTGTATGTTGATTTCTCCTTAN
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTATAGTTCTCTTAAGTGAGAGGAA
ATGGAAAAAAAACCCACCCACTTAATTCTAATTTGTCAAAAATATAATTT
GCATACTACTGCCCAAAGAGAAAGCTGCAGTGAGCTAATTTTGATTGGAG
GGTTCAACTACCCTTTGACATAGCAGCTGCCCTCTTTCCAGACTGGGCAC
ATCTTGTTGACTCCAGTTGTTCATGGAGCCACTATCAGAGGCATTTGTTG
TTGATTCTCAAACCAGGGAAATCCCAAGAATCCCGTTTTGGTCTCAGAGG
TCATCTCACCTTACCCTCAGGTATCTCTGATATTGTGATCTTTTTCCTGT
AGCCAATCCTACTTGTTCTTCAAAGTCATCAGTTGCATTTAATATTACCA
AGGTATTATTTTGAGATTCTCCTTGCGTGCTTTTTTTCTAATTCATGAGT
TTGAAACAAGTTGGAGGTGAATGCAGAAAAAAATAGTATTAGCTTCCAGT
AACAGATACTTTGGATATTTTTGAAAAATTTGAACTGTTTATGAAAGCAT
TTACATCTTAAAGTTTGTAAACCCATAAAGCTAATCTTGAAAGTACACTT
AAAGAGTCCTTCACAAAACTATTTTATATAAGCCATGTACTATCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_d01.g1 MSMg01no071_d01.g1 CHROMAT_FILE:
MSMg01no071_d01.g1 PHD_FILE: MSMg01no071_d01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:30 2005
         (322 letters)



>mm_chr12_9353565_9354290
          Length = 726

 Score =  580 bits (300), Expect = e-170
 Identities = 318/326 (97%), Gaps = 4/326 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttatagttctcttaagtgagaggaaatggaaaaaaaa----cccacccacttaattctaa 56
           |||||||||||||||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 201 ttatagttctcttaagtgagaggaaatggaaaaaaaaaaaacccacccacttaattctaa 260

                                                                       
Query: 57  tttgtcaaaaatataatttgcatactactgcccaaagagaaagctgcagtgagctaattt 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtcaaaaatataatttgcatactactgcccaaagagaaagctgcagtgagctaattt 320

                                                                       
Query: 117 tgattggagggttcaactaccctttgacatagcagctgccctctttccagactgggcaca 176
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tgattggagggttcaactaccctttgacatagcagctgccctctttccagactgggcata 380

                                                                       
Query: 177 tcttgttgactccagttgttcatggagccactatcagaggcatttgttgttgattctcaa 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttgttgactccagttgttcatggagccactatcagaggcatttgttgttgattctcaa 440

                                                                       
Query: 237 accagggaaatcccaagaatcccgttttggtctcagaggtcatctcaccttaccctcagg 296
           ||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 441 accagggaaatcccaggaatccagttttggtctcagtggtcatctcaccttaccctcagg 500

                                     
Query: 297 tatctctgatattgtgatctttttcc 322
           ||||||||||||||||||||||||||
Sbjct: 501 tatctctgatattgtgatctttttcc 526


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 726
Length adjustment: 9
Effective length of query: 313
Effective length of database: 717
Effective search space:   224421
Effective search space used:   224421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)