BAC Information

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BAC

Clone NameMSMg01-072A22
Chromosome12 (Build37)
Map Location 77,723,029 - 77,723,599
singlet/doubletsinglet
Overlap geneSpnb1
Upstream geneWdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3
Downstream geneChurc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772, Fut8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072A22.T7 (MSMg01no072_a22.b1)MSMg01-072A22.TJ (MSMg01no072_a22.g1)
ACCAG295693AG295694
length704700
length of high quality
(start - end)
573 (44 - 616)63 (165 - 227)
definitionCHROMAT_FILE: MSMg01no072_a22.b1 PHD_FILE: MSMg01no072_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:40 2005CHROMAT_FILE: MSMg01no072_a22.g1 PHD_FILE: MSMg01no072_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:19:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAATCCGCGGAATT
CTTAAGATGGCTCCCGATTTACCCAAGGTGGACAAGGGCCCAGAGGATGG
GGTCCAGCATCAGAGGCCTCGACGGAGCGAGCACCCTTTGCCTCACCTTT
CCCCTCAGCGAACTGCAGGGTGGCCGCTGTGATGGCCTTCACTTTGTCCC
CTTGGATGGCAATGTCGGCCTCCATTAGCTTGTGCTTCTGCAGCAGGTCT
TCAACCTCTAACAAGTGCTTCCCAAATTCAGCAGACAAGATGTGAGCCTG
TCAAGGGACCAGGACAAATGATGAGGAAGGCCACCTCCTTAGGGTGTGTG
CCTGCATCCTAGCCAGGGAGACTCGGATACAGCAGGGATGTGGCTGCTGC
TTGGGACGAGAGATGCTACAGAGTAGGACTTCCTACAAAAGGATGCCCTC
TGGAACCTTCCATGCAGTGTCCTACAAAGTCTCAAACTTCACACTCATCT
GCATCATTTGCTTCAAGGCCTGGAGCCTGGGCATGTTTATTTTTAGAAAG
CTTGTGGTCAATTTCACGCTTATTTTCACCCAACACCTCCTGCATCAGAG
GGAGAGAATCCAGACTTCTCTGGTTTCCCATGCAGAGTAGGTCTAGATTC
TAACCAGAATCAAAGCCCAATTCTCGGAGCCTGATCCTGTGTGCTTCTTA
TTAT
TGAATGGTGTAGGCCGGNGGNGNCTGGCTTTTCCTCATCGCNGANNANAG
AAGGACTGCANCCACCGGGGGAGNCGAGCNGGAGGANGAAGCCGGGACCG
CGCCAGGGCCCCAGACCCCGCAGGCAANNCGGGGGGGCAGGAAAANACGA
GAGNCCCCCGGCGCCCCCAGCAACAGGACCGGAAGGACCGCGGACGCCAG
CCACCAGGGAGGGGACCCGCGGCCGGAACACAGGGCCACCGGGGAGTCAG
GACAGCAGAGCGGGCCCCGGGCCCGGCNAGGAACACCGGCCGAACACCGA
GCCAGCGGGAGGCTTTTCTTGTCCACACGCCCACCCGANGGGGGNACNCC
NACTTTTTTTGTCCCCACACATCGTCACGCAGGTTTCGGAAAACGTCCCC
AGCGACACCCGGAAGGTGAAATCTCGCGAGAGTTGAGATTTCGATTTTGT
CGCACACGATATAAGGACTCCGCAGCTGGCTAGAATACTCCGCCCATAGC
AACGGTTGTTAGGCGGTTTCCGGGTAAGGAAGGTGCACCGAGGACTGGAC
TCTAAAATCTTTCGGTAGTGAAAAGATCTGAGGACTCAAAGAAGGTGTCG
AATAGAGGAGGAGGCGCTGTAGCTGGGAGAGCTTCCAATAGGCTTCTTTT
TTTTTTTCTGACCACACTAGAGTCTCTGAGGCACTGCTAACGTGGTATGT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_a22.b1 MSMg01no072_a22.b1 CHROMAT_FILE:
MSMg01no072_a22.b1 PHD_FILE: MSMg01no072_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:19:40 2005
         (573 letters)



>mm_chr12_77722827_77723799
          Length = 973

 Score = 1089 bits (563), Expect = 0.0
 Identities = 569/571 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcttaagatggctcccgatttacccaaggtggacaagggcccagaggatggggtcc 62
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcttaagatggctccagatttacccaaggtggacaagggcccagaggatggggtcc 262

                                                                       
Query: 63  agcatcagaggcctcgacggagcgagcaccctttgcctcacctttcccctcagcgaactg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agcatcagaggcctcgacggagcgagcaccctttgcctcacctttcccctcagcgaactg 322

                                                                       
Query: 123 cagggtggccgctgtgatggccttcactttgtccccttggatggcaatgtcggcctccat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cagggtggccgctgtgatggccttcactttgtccccttggatggcaatgtcggcctccat 382

                                                                       
Query: 183 tagcttgtgcttctgcagcaggtcttcaacctctaacaagtgcttcccaaattcagcaga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tagcttgtgcttctgcagcaggtcttcaacctctaacaagtgcttcccaaattcagcaga 442

                                                                       
Query: 243 caagatgtgagcctgtcaagggaccaggacaaatgatgaggaaggccacctccttagggt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caagatgtgagcctgtcaagggaccaggacaaatgatgaggaaggccacctccttagggt 502

                                                                       
Query: 303 gtgtgcctgcatcctagccagggagactcggatacagcagggatgtggctgctgcttggg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gtgtgcctgcatcctagccagggagactcggatacagcagggatgtggctgctgcttggg 562

                                                                       
Query: 363 acgagagatgctacagagtaggacttcctacaaaaggatgccctctggaaccttccatgc 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acgagagatgctacagagtaggacttcctacaaaaggatgccctctggaaccttccatgc 622

                                                                       
Query: 423 agtgtcctacaaagtctcaaacttcacactcatctgcatcatttgcttcaaggcctggag 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 623 agtgtcctacaaagtctcaaacttcacactcatctgcatcatttgcttcaaggtctggag 682

                                                                       
Query: 483 cctgggcatgtttatttttagaaagcttgtggtcaatttcacgcttattttcacccaaca 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cctgggcatgtttatttttagaaagcttgtggtcaatttcacgcttattttcacccaaca 742

                                          
Query: 543 cctcctgcatcagagggagagaatccagact 573
           |||||||||||||||||||||||||||||||
Sbjct: 743 cctcctgcatcagagggagagaatccagact 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)