BAC Information

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BAC

Clone NameMSMg01-072M16
Chromosome12 (Build37)
Map Location 60,246,583 - 60,247,050
singlet/doubletsinglet
Overlap geneMgea6
Upstream geneSstr1, Clec14a, LOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2
Downstream geneFbxo33, LOC665628, LOC238199, LOC665639, LOC665644, EG622488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072M16.T7 (MSMg01no072_m16.b1)MSMg01-072M16.TJ (MSMg01no072_m16.g1)
ACCAG296246AG296247
length702695
length of high quality
(start - end)
472 (43 - 514)451 (67 - 517)
definitionCHROMAT_FILE: MSMg01no072_m16.b1 PHD_FILE: MSMg01no072_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:39 2005CHROMAT_FILE: MSMg01no072_m16.g1 PHD_FILE: MSMg01no072_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAAT
TCACTTGTATAACCTACAAGAAGTTAAAGACTCCAAATACATTCCTTACA
TTTTTTTTCTTTATTTGTTACTTATGAATATCCTCAAGAACATTTTTAGT
TGCTCTGCATTCTTTGCTGAGCCTCTGTTATAAGTGCTATCCCAATGAGA
ATGCATTAATTTATAGAATGAAAGAAATTTAGGCAGGTCTGAGGGACACC
TGCCACTCTGACACTTGGGAGGCTAATGCTGGAGGATTGTCAAGTGTGTA
CTAAACAAAGAGACAAATAACACCACCAAAAACCAGTCAAAAGCCAAAAC
ACATAAAGAGTTTTAAAAAGTTGTTTTGCATGCATGGTAACAGAAAAATT
GTTACTGGGTAACAAAGACAAACATTATTCAGGCTTGGTGTTACAGGTAA
TATAAACACAGCAGTTTGTTGTTATGACAACAGGTTTATGTAAATTACAA
GTCAGATGAGTTGAGATTTGGCCTAATTGAATATCTTAGAAAATACTCTG
TTAATTTTAAGTAGTTGAAAACATTTGTAGGAGTGTAATTGTAATTGGAC
ACAAACTATAATGTCATACAAGTTTTACAAAGCTTGACAGTTGACTTTGA
GGTTTAAATCATACCAATAGAATAACTTTGATTGAAATCTCAAGTTCTAT
GT
ATGAAGTGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGTACTGCCCCTGGTATTACACTATCTCTTTGAG
TAAAAGTTAGGTCACTGCCCTTCACAGGAATTTACCATCACTAAGGAAGA
AAGAAGTTTCTGACCATAGGAGAAACCAGAATAGATATTTAGAATTATAG
CTGAGTTACACCTATATACAGGAATTTACAATGGTTTAGGAAGTAGATCC
GGCTGTGGTTTTAGAGTATTGCATTATTCATGAGATGGTTAGCTAGAACG
GAACTCCCTAGTTAGAACCATGACTTGAGTGTGAAAGCCCTTGCCCTAGG
AGTGAAAAGTTCTCACACCTGGCTTCTAAGACTATAGCTGACCTTAGATA
GGGCTGACTCTGTCTCAGTTATTTTATTGCCCAGTTCCTGCCAGTCTTTG
CGTTTTCATTTCCTCTGTTCTGTGTAAGAGTCACTAAGCATCCGGTTACC
TCATTTGTACCTTATGTGTATGTCACCCAACTAACTTGTTGTCTTCTGCA
TAAAAAGTCTGATGTTCGCTTTGAAAAATTACATTCAGATTCTACACAAA
CTCTCCTGCGTGCGTGTCTGTCTGTCATTTCTCCACGCTTTGCCCATCGC
GTCCGAGAGACCCCGTTCCATGCAAACACAAGGACCGAGAAGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_m16.b1 MSMg01no072_m16.b1 CHROMAT_FILE:
MSMg01no072_m16.b1 PHD_FILE: MSMg01no072_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:39 2005
         (472 letters)



>mm_chr12_60246379_60247250
          Length = 872

 Score =  866 bits (448), Expect = 0.0
 Identities = 463/468 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttgtataacctacaagaagttaaagactccaaatacattccttacatttttt 64
           |||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcgcttgtagaatctacaagaagttaaagactccaaatacattccttacatttttt 264

                                                                       
Query: 65  ttctttatttgttacttatgaatatcctcaagaacatttttagttgctctgcattctttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctttatttgttacttatgaatatcctcaagaacatttttagttgctctgcattctttg 324

                                                                       
Query: 125 ctgagcctctgttataagtgctatcccaatgagaatgcattaatttatagaatgaaagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgagcctctgttataagtgctatcccaatgagaatgcattaatttatagaatgaaagaa 384

                                                                       
Query: 185 atttaggcaggtctgagggacacctgccactctgacacttgggaggctaatgctggagga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atttaggcaggtctgagggacacctgccactctgacacttgggaggctaatgctggagga 444

                                                                       
Query: 245 ttgtcaagtgtgtactaaacaaagagacaaataacaccaccaaaaaccagtcaaaagcca 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 ttgtcaagtgtgtactaaacaaagagacaaaaaacaccaccaaaaaccagtcaaaagcca 504

                                                                       
Query: 305 aaacacataaagagttttaaaaagttgttttgcatgcatggtaacagaaaaattgttact 364
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 aaacacataaagagttttaaaaagtagttttgcatgcatggtaacagaaaaattgttact 564

                                                                       
Query: 365 gggtaacaaagacaaacattattcaggcttggtgttacaggtaatataaacacagcagtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggtaacaaagacaaacattattcaggcttggtgttacaggtaatataaacacagcagtt 624

                                                           
Query: 425 tgttgttatgacaacaggtttatgtaaattacaagtcagatgagttga 472
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgttgttatgacaacaggtttatgtaaattacaagtcagatgagttga 672


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)