BAC Information

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BAC

Clone NameMSMg01-072M24
Chromosome12 (Build37)
Map Location 51,650,172 - 51,650,580
singlet/doubletsinglet
Overlap genePrkcm
Upstream geneLOC665071, LOC665077, LOC100039455
Downstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072M24.T7 (MSMg01no072_m24.b1)MSMg01-072M24.TJ (MSMg01no072_m24.g1)
ACCAG296262AG296263
length690692
length of high quality
(start - end)
412 (45 - 456)527 (75 - 601)
definitionCHROMAT_FILE: MSMg01no072_m24.b1 PHD_FILE: MSMg01no072_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:40 2005CHROMAT_FILE: MSMg01no072_m24.g1 PHD_FILE: MSMg01no072_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATAATTTGCGGCGCTAAACGACTACTATAGGTCCAGAATCCGCGGAA
TTCTGTGCTGCTTTTCATGCTGGGTTGTAAGAGCAGAGGACCAAGGGATC
CTTCCCACCAAAGGGGAGTGTGCAGCTATGGCTGTGGGACCCTCCAGGCT
GGCTACACGGAGGACACTTAGCCCTGCCAGGCAGGGTCTACTATGATGAT
GGAAGAAATCAGTTTTCTACTACACAACTCAGCACACTGTAAATACTCCA
CAGAGACTACCAATTAATATCAACAATACAGCATGCTCTAACAGAGAGCT
CTCAAGGGCTGAGCTCCCAAGTCTCAGAGAAAATGATACACCTCCTTCCT
GCATCTACTACTCCTTGCCCCATCAGAGGATGCTCCCTCACTCATAGCCA
ACTTCAGCCTTCAGCCCCCTTTGCAGACACCTGAAGAACTGTGCAAACAA
ACAAACAACATAAAAAAAAAAAAGAAGTTTAGGATCTAAATTAATTTTTA
CCACTGCTAACTCTGTACCTCTGATAAACACATTGGGCTGTTCATTAGCA
AAAATGGAATTTGAATTTCAAAGATGAATGAATATTCATTCCCTCTAAGT
AATTACATACTAAGGTGTTCACATGTATTTGTTGAATGAAAGACTGAATT
AATGAATGGATATGTGCAGACATCTCCCTAAGCTGGCTTA
NCCATGAAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCCAGGATGTAGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACTGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGCACTCACTGATAAGT
GGATATTAGCCCAAAACCTAGGATACCCATGATATAAGATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_m24.b1 MSMg01no072_m24.b1 CHROMAT_FILE:
MSMg01no072_m24.b1 PHD_FILE: MSMg01no072_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:40 2005
         (412 letters)



>mm_chr12_51649969_51650780
          Length = 812

 Score =  752 bits (389), Expect = 0.0
 Identities = 404/409 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctgtgctgcttttcatgctgggttgtaagagcagaggaccaagggatccttccca 63
           |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 204 gaattctgtgctgctttttatgctgggttgtaagagcaaaggaccaagggatccttccca 263

                                                                       
Query: 64  ccaaaggggagtgtgcagctatggctgtgggaccctccaggctggctacacggaggacac 123
           |||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 264 ccaaagggtagtgtgcagctatgtctgtggggccctccaggctggctacacggaggacac 323

                                                                       
Query: 124 ttagccctgccaggcagggtctactatgatgatggaagaaatcagttttctactacacaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttagccctgccaggcagggtctactatgatgatggaagaaatcagttttctactacacaa 383

                                                                       
Query: 184 ctcagcacactgtaaatactccacagagactaccaattaatatcaacaatacagcatgct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctcagcacactgtaaatactccacagagactaccaattaatatcaacaatacagcatgct 443

                                                                       
Query: 244 ctaacagagagctctcaagggctgagctcccaagtctcagagaaaatgatacacctcctt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctaacagagagctctcaagggctgagctcccaagtctcagagaaaatgatacacctcctt 503

                                                                       
Query: 304 cctgcatctactactccttgccccatcagaggatgctccctcactcatagccaacttcag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cctgcatctactactccttgccccatcagaggatgctccctcactcatagccaacttcag 563

                                                            
Query: 364 ccttcagccccctttgcagacacctgaagaactgtgcaaacaaacaaac 412
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccttcagccccctttgcagacacctgaagaactgtgcaaacaaacaaac 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)