Query= MSMg01no073_a11.b1 MSMg01no073_a11.b1 CHROMAT_FILE:
MSMg01no073_a11.b1 PHD_FILE: MSMg01no073_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:58 2005
(318 letters)
>mm_chr12_100240736_100241454
Length = 719
Score = 555 bits (287), Expect = e-162
Identities = 308/315 (97%), Gaps = 1/315 (0%)
Strand = Plus / Minus
Query: 4 ggaattcctcacatctacccttagttacgccacagggttattcacgaagtggaaacacct 63
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 518 ggaattcctcacatctacccttagttacgccatagggttattcttgaagtggaaacacct 459
Query: 64 ggagtcagttgtagtcctttctaccaatcgcgctgagtaccacagtgtgaaatcacttgg 123
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ggaatcagttgtagtcctttctaccaatcgcgctgagtaccacagtgtgaaatcacttgg 399
Query: 124 tgtattagaaagaaa-ccccgagaaaggtggcccagggtaatcttcatttccactgctgt 182
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 398 tgtattagaaagaaacccccgagaacggtggcccagggtaatcttcatttccactgctgt 339
Query: 183 tctttctttgctgtgacaagaactatggttgaagttagttccacagctagcgcgggggag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tctttctttgctgtgacaagaactatggttgaagttagttccacagctagcgcgggggag 279
Query: 243 aaattgtctcattgcctatggttttgcatttgctttttctattccttccacagactgact 302
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 278 aaattgtctcattgcctatggttttgcatttgccttttctattccttccacagactgact 219
Query: 303 aggcattcaatagcc 317
|||||||||||||||
Sbjct: 218 aggcattcaatagcc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space: 219390
Effective search space used: 219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_a11.g1 MSMg01no073_a11.g1 CHROMAT_FILE:
MSMg01no073_a11.g1 PHD_FILE: MSMg01no073_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:58 2005
(478 letters)
>mm_chr12_100178423_100179300
Length = 878
Score = 857 bits (443), Expect = 0.0
Identities = 470/479 (98%), Gaps = 2/479 (0%)
Strand = Plus / Plus
Query: 1 atagagaataaagaagtagatgttcctcctgacttctgatgtacttcatctactgggggc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 atagagaataaagaagtagatgttcctcctgacttctgatgtacttcatctattgggggc 260
Query: 61 aggggagaatgatggactcgcttccctgggtttgcttagctcagcacagaaaattcacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 261 tggggagaatgatggactcgcttccctgggtttgcttagctcagcacagaaagtttacat 320
Query: 121 cctcttaacacttgagaggttagtagggagctagatagctagcaaaacagagtggacagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcttaacacttgagaggttagtagggagctagatagctagcaaaacagagtggacagt 380
Query: 181 aaaatagtaacaactcaaaactagttaaaatatatgttcataggtgtttaatggctaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatagtaacaactcaaaactagttaaaatatatgttcataggtgtttaatggctaagt 440
Query: 241 ctgtaaatgatacctagtataaaaacctggcttttaaaaagtttgatttaatatgaatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtaaatgatacctagtataaaaacctggcttttaaaaagtttgatttaatatgaatat 500
Query: 301 ggtgtacatgcctataattccagcacccagaaggctaaatcagggagtctagagttcaag 360
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct: 501 ggtgtacatgcctataattccagcacccagaagactaaatcagggggtctagagttccag 560
Query: 361 gccatcctgggctacataaactggggggtggaggtttgggtggatcagggagggaagcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccatcctgggctacataaactggggggtggaggtttgggtggatcagggagggaagcag 620
Query: 421 actggctgagaaagatttaagttattc-aaatcatgacccataaactttattggctcct 478
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 621 actggctgagaaagatttaagttattccaaatcatgacccataaactttattg-ctcct 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
