BAC Information

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BAC

Clone NameMSMg01-073E14
Chromosome12 (Build37)
Map Location 17,645,632 - 17,645,757
singlet/doubletsinglet
Overlap genenone
Upstream geneNtsr2, Greb1, E2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528
Downstream geneHpcal1, EG668525, LOC673341, EG245297, LOC100042573, LOC668539, LOC100043324, LOC636282, EG632781, LOC668541, LOC673160, 5730507C01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073E14.T7 (MSMg01no073_e14.b1)MSMg01-073E14.TJ (MSMg01no073_e14.g1)
ACCAG296622AG296623
length729707
length of high quality
(start - end)
126 (128 - 253)259 (74 - 332)
definitionCHROMAT_FILE: MSMg01no073_e14.b1 PHD_FILE: MSMg01no073_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:18 2005CHROMAT_FILE: MSMg01no073_e14.g1 PHD_FILE: MSMg01no073_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAATAGGATCCGCG
GAATTCTCCGGTATACTGAAAGACTGCTGCTTTCAAGGCAGCATGAGACT
GGCTCTCCTTAACATCGTTGGATGGGCTGCGACTGCTGCACATACTCTGA
AAATGCCTCTGGTTGGCCGCATTGATCAAGTTGAATGCTTTCTAGTCCCC
ATGTACATAATACATTGTCTGTGTGGCTAGTGTTGCCACTCTACCCAATA
TAGGCAGTGGTGGTTCTGATTGGATAAAATATTCCGTGAGTGTAGTGTGT
GCGTGTGTGTGTGTGTGTGTGTGTGTGCCTGCTATATTACTCCTTCTCAT
CTACCTCTAATATATTCCAACCCCTCTCTTTCTTTCACTCATCCATTTAA
TTATTATACTATTTTATACACTTTATCCTATATCTCTCACCCTTCTAATC
TTCAACCATCCATAATACATTCATTCACTATTACATTAACTTTATTTCTT
CAATAATTTTGTTTACTTTCATATTATTTACCACATAAACATATTTATTA
TATTACTATTATATATTTATATCTATATATATTATATTTCTTACTTATTC
CTCTCATTCTCCTATATTCCCCTTTCTCCTCCCTTTCTTTTCACCCCTCG
CCTTACCTTATATTTCTTTGACTCTTTCTTCTTTTTAATTTCTCTTTCCT
CCTTTTTCCTTATTTCCTTTTTTCTTCTC
CCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTAAGAAATGGCTAACATTGATTATC
AACTTGATGGGATCTAGAATCACCTAGAAAACAAAGGGAAGACCCACCCT
AAGTGTGGGGCCACCATTCCGTAGGCTAGGATTTTGGACTGAATAAGAGG
GAGAGAGTAAGCTGAGCACCAGGATGTCCCCATCCCTTCCTGACTGTGTA
GCAGTGTGACCAGACACCTCAGGCTCCTGGCGCCATCCTTTCTTCTTTTC
TCCTTTTGTGAGAGCAATGAGAAAAGTACCAACAGAAGCACCTTGCCCGA
TGTTTTCTGTGAGAGTCTTTTGCTACTGCGCTGTAAGAGCTCTTTGCACA
TTCCAGATATAACTCTAGAACGATCTTGCCTGCAGTCTGGCTCTTCTCTT
CTCCCGCCTCTTTTCAAGCTCTTCCCAGTGTCCTTTGATAGGCAACTGCA
TTATCTTGCGATGTTTGTTCTTTTCTGAATCATTATCTAAGACGTCATGG
TCTAACTCAAGGCCAAGACTTGCTCATTTAGCCTCCTAGGAGTGGTCTAG
CTTTAGCCCCTATTTGTAGCGTTTCTGGCACCTTTTGAGTTAATTCCTCT
ATACCGGATGATATGGCAGTCTAACCTCATTCTTCTTTTTTCTTTGAATT
TTGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_e14.b1 MSMg01no073_e14.b1 CHROMAT_FILE:
MSMg01no073_e14.b1 PHD_FILE: MSMg01no073_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:18 2005
         (126 letters)



>mm_chr12_17645432_17645957
          Length = 526

 Score =  244 bits (126), Expect = 2e-69
 Identities = 126/126 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcgactgctgcacatactctgaaaatgcctctggttggccgcattgatcaagttgaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcgactgctgcacatactctgaaaatgcctctggttggccgcattgatcaagttgaatg 260

                                                                       
Query: 61  ctttctagtccccatgtacataatacattgtctgtgtggctagtgttgccactctaccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttctagtccccatgtacataatacattgtctgtgtggctagtgttgccactctaccca 320

                 
Query: 121 atatag 126
           ||||||
Sbjct: 321 atatag 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 526
Length adjustment: 8
Effective length of query: 118
Effective length of database: 518
Effective search space:    61124
Effective search space used:    61124
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)