BAC Information

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BAC

Clone NameMSMg01-074F07
Chromosome12 (Build37)
Map Location 17,770,907 - 17,771,187
singlet/doubletsinglet
Overlap geneHpcal1
Upstream geneE2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528
Downstream geneEG668525, LOC673341, EG245297, LOC100042573, LOC668539, LOC100043324, LOC636282, EG632781, LOC668541, LOC673160, 5730507C01Rik, EG668553, LOC668558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074F07.T7 (MSMg01no074_f07.b1)MSMg01-074F07.TJ (MSMg01no074_f07.g1)
ACCAG297412AG297413
length694750
length of high quality
(start - end)
281 (73 - 353)281 (134 - 414)
definitionCHROMAT_FILE: MSMg01no074_f07.b1 PHD_FILE: MSMg01no074_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:40 2005CHROMAT_FILE: MSMg01no074_f07.g1 PHD_FILE: MSMg01no074_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGATCCGCG
GAATTCTTGGTTCCCACAAAACAGAGGCTTCATCTGGACACTCAGCAAAG
GAGCCATTCCTTTCCCACTGCCCCATAGCCTTCTCTTTTTTCTATCCTTC
CTGTTCCACGTGGCTGAGGTCACACAGTGTGCCCAATGTGTGCCAAAGGT
CACTTAGCTGCTGGGCAAGCTTGAAACAAGAACTTACCCATGGCTCTCCC
CAGACCCAGCATGTCCCCTTTAAACCTGGGAACCTCTCTAGGGGGACAGG
GGATGGCTGATACTATGTTTTTTCTTGGATTGGGTGTGGTCCCCTGTACT
GAGCTGTTTTATTTGACCCCCCCCCCCCCGGTCCTTATAGCTGTTCCCAG
AAGGCTGACATTGCCCCCCGAAAAAAAAAAACTAATCCACCTCCAGCTGG
TTGAGACAAGGCTCTGTCTAGAGCACTAGTTCTCAAGTTTCCTAGTGCTG
CATCCCTTTAAGACAGCTCCTCCACCATAAAATTATTTTTGTTGCTACCT
AATAACTCGTACATTTGCTTCAGTTATGAATTTAATGTAAAACCTGTGCT
TTTCTGATGCTCTTATGCGATTCCCTGAAAGGGTCGTTACAGCCCTCCAA
AGGTGTTTAAAAATACAGTATTCTGTAGAAACATTGCTCCCAAG
TTGTTTTTTTTTTTTTTTTTTTTCTTTTTTTTNCCCCCCNCCCCCCAACA
GCCCTCNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTAGTAGTTGTTTGT
AAGCACAGAGCCAGGTCTACAGGCCTCAGAGTTCTGCCGCTGTTTTTGAG
TCAGGGCCTCTCTCTGAACCCAGAGAGTACTTATCATCATTTTGTCTAGA
CTAGCTGGACAGAACGACCCTAGAATTGGTTCCTGTTGTCTCTATCCCAC
AGTGCCAGGGTCACAGCAAACAAGGACATATGTGGCGCTTTACACGGGTG
CTGGGGATCTGAACCCAAGTCCTTATGCTTACACACAGGGAGCACTCCAC
CTCTCAGACTGCGGCTTCCTGCATCTCCGCCTTTAATACTTTGCCACTGC
GAACCCCCACAGTGCCTACAACCCACCCAGGATACACACACTGTTTATAA
CTGTGAGTCAGGGCTGCATGACATTTCCCAGGTTCAGCATGAGGCCCAAG
AGACTCTTCCTATCCTGAAGGCTCAAACACTTTGTGGCCCCCAGGGCTAT
GTACTCCTGACGGAATGAGAGGGATGTGGGTCGATCTCCCCTTTTCCAGT
GCTCCCTTCTGCTACTTTATTGTTAGATAAATTTATTCTCCCTATATGTG
CCAAACCTTACCTCAGCCCACCCTTGACAAATTCTAAAGTTCCTCCCTTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_f07.b1 MSMg01no074_f07.b1 CHROMAT_FILE:
MSMg01no074_f07.b1 PHD_FILE: MSMg01no074_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:40 2005
         (281 letters)



>mm_chr12_17770707_17771387
          Length = 681

 Score =  466 bits (241), Expect = e-136
 Identities = 271/281 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggcttcatctggacactcagcaaaggagccattcctttcccactgccccatagcctt 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 agaggcttcatctggactctcagcaaaggagccattcctttcccactgctccatagcctt 260

                                                                       
Query: 61  ctcttttttctatccttcctgttccacgtggctgaggtcacacagtgtgcccaatgtgtg 120
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 261 ctcttttttctatccttcctgttccatgtggctgaggtcacacggtgtgcccaatgtgtg 320

                                                                       
Query: 121 ccaaaggtcacttagctgctgggcaagcttgaaacaagaacttacccatggctctcccca 180
            ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 321 tcaaaggtcacttagctgctgggcaagcttgaaacaagaacttaaccatggctctcccca 380

                                                                       
Query: 181 gacccagcatgtcccctttaaacctgggaacctctctagggggacaggggatggctgata 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacccagcatgtcccctttaaacttgggaacctctctagggggacaggggatggctgata 440

                                                    
Query: 241 ctatgttttttcttggattgggtgtggtcccctgtactgag 281
           ||| ||  |||||||||||||||||||||||||||||||||
Sbjct: 441 ctaagtgctttcttggattgggtgtggtcccctgtactgag 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)