BAC Information

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BAC

Clone NameMSMg01-074M12
Chromosome12 (Build37)
Map Location 5,572,241 - 5,572,377
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332, Klhl29, 2810032G03Rik
Downstream geneLOC435292, LOC100042095, LOC672098, LOC100043137, LOC238049, LOC100042118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074M12.T7 (MSMg01no074_m12.b1)MSMg01-074M12.TJ (MSMg01no074_m12.g1)
ACCAG297755AG297756
length817725
length of high quality
(start - end)
39 (67 - 105)137 (125 - 261)
definitionCHROMAT_FILE: MSMg01no074_m12.b1 PHD_FILE: MSMg01no074_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:15 2005CHROMAT_FILE: MSMg01no074_m12.g1 PHD_FILE: MSMg01no074_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGCAATTCC
AGGGTCTCACGCCTGCTAGGCAAATAGCCTTATCCCTGAACTATATTCTC
AATCGGGAGAATTCTAATCGCCTTCCATCTCGTTTGAACTGCATTTCGTT
TGCTTCGTGGCCTTTCTCTGCAGTGAGCATCATCTCTTCCCCTCGGCAAT
ATAGTCCTATTTTATGTACTGTCCTCGGCCACTCCCTATGGAGTTACCCT
CTCTACCCACTGCTGATACGACCATGCATAGATTCCTTTGTGTTTCTACT
CACAGCGCATCCACATTCGTGGATACGACCTGTCTTGCTTCTATCTCTCC
ATGCTTCCAACTCTTCTGCCCTGGTCCACTGATATTCTCTGACCACCACT
CGTATCTCCTTTCATCATTGCTTCACTTCATCTCGTTTTGAATCACCCCG
CCCCATAAATTAGAAACAATCAATGTTGCCTAGATGACCTTCTCGCTATT
AAAGCGTCTAATTATTGATGGTAAAACACTTTTACCAGCCTTCGTCTGTT
TCCAACTTCTAGATCATGACCCGCCGTTTTCCACAGGCCTCAGCCGACTA
CTGACCATAGTTTCGTCACCTTTATAATTTCCCCCACCGTTTTTTTTCGC
TTTCTCTTCTTCAACTCGACCTCAAGCATACTCTCTCCTCCTCCTTTTCC
CCCCGCACACCACTTACCCTACATTTTTTTCTCCGCTCTTCATTCCCCAG
TTTCTCCACCCCACCTATGTATCCTCCTTGCCTATATCCCCCCCCTCCCT
CATTATTTTATATCCTA
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGGGTCTGTTAAGCACATTCATGCTCCAGTTT
CTAATCTATGTCTTTCGCCTTGCACAACTTGAACATACTGTCATCATTTT
AAAGGAGAAGAGCGACGAGGAAATGAGAACTAAGAGCAGAGGGAGCGGTA
GGGAGGGGAGGTGGGAGGAGATTGAGCCTGACCTTCTCCCACTTTAGAAA
TTCCCATTTTCTGCAGCACGGATATGTCTTTGCCTCCCCCATACTCCATT
CTGTCGGGTTCTTACCTGTCTGCATCCAGACCCTGTCTGTCGGCATCTCT
GTGATTTTTTTTGGCCCCCCCCCCCCAACTATGATTATATACCAATATCA
TCCTTATCCCCATAGCTGGTCTGCCCCCGATTAACCGCTAATTGTATTCT
CTATTTCCTGTTTACAGTATTCTTGCCGTAACCCCTTACTTTTGTCATTA
CTGCCCCCGTCGCGTATCTGATAGCCTTGGTGCTTTCCTACCTCCCTCAC
GTTAAACCTGCGTTTGAGGTCTTATTCTGGCCCGGCTTTCTATTGCCGCC
CTACCTCCGTTCCTCCTTGCCCCTGCCGTATCTATTGGGCCTTCTCTGCC
CTTTATTATCTTCCCCCCCCACGCCCCCCTTTGTGTTCCCGTTTCCTTCC
CCTCCCCCGGAATTTTGTTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_m12.g1 MSMg01no074_m12.g1 CHROMAT_FILE:
MSMg01no074_m12.g1 PHD_FILE: MSMg01no074_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:15 2005
         (137 letters)



>mm_chr12_5572041_5572577
          Length = 537

 Score =  234 bits (121), Expect = 2e-66
 Identities = 133/137 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacttgaacatactgtcatcattttaaaggagaagagcgacgaggaaatgagaactaag 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 337 caacttgaacatactgtcatcattttaaaggagaagagcgaagaggaaatgagaactaag 278

                                                                       
Query: 61  agcagagggagcggtagggaggggaggtgggaggagattgagcctgaccttctcccactt 120
           |||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 277 agcagagggagcagtagggaggggaggagggaggagattgagcctgcccttctcccactt 218

                            
Query: 121 tagaaattcccattttc 137
           |||||||||||||||||
Sbjct: 217 tagaaattcccattttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 537
Length adjustment: 8
Effective length of query: 129
Effective length of database: 529
Effective search space:    68241
Effective search space used:    68241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)