BAC Information

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BAC

Clone NameMSMg01-074N09
Chromosome12 (Build37)
Map Location 103,233,611 - 103,233,935
singlet/doubletsinglet
Overlap geneCpsf2
Upstream gene0610010D24Rik, LOC100040184, Smek1, 4930463M05Rik, Mylf-ps, 4932415G16Rik, Mtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297
Downstream geneSlc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074N09.T7 (MSMg01no074_n09.b1)MSMg01-074N09.TJ (MSMg01no074_n09.g1)
ACCAG297797AG297798
length686663
length of high quality
(start - end)
312 (49 - 360)344 (55 - 398)
definitionCHROMAT_FILE: MSMg01no074_n09.b1 PHD_FILE: MSMg01no074_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:20 2005CHROMAT_FILE: MSMg01no074_n09.g1 PHD_FILE: MSMg01no074_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAATCTACTCCAAGAGATGTTTTAAAAAAGATATAGTAGTAAC
ATTTAAAATAAGAACTGGGCAACCTCATCAACATGCAACAACTGAATTAG
CAGTTTTTATCATCAGAGTACCTTGAAAACTAGAGAATCCTTGGGGCTGG
CGAGATGGCTCAGTGAGGAAAACACTTCACTGCCATGAAGGCCCCATAAC
CTAAGCTCCAACCCTAGAACCCACTGTGCAAGGAGAGAACCAACTCCATA
AAGTTGTCCTTGGACTTCCATGAGTGCACACGTGTATATACATAACGATT
TAAAAACATATTGAAACCAAGCGCCTCACAGGTTGAGGACTGACTGCTCT
TCCAGATGATCTGGCTACCCCCCTTGGAATACACATAGCAGTACACAACT
GTCTGGAGGCATACCCTCTTCAGGCCTCCATGGGCACGAGACATGCACGT
GGTGCAGACATATAAGCAGGCAAAGCATCCACATATATAAAAGAATAAGA
AAACAGTTAATGCAAACAGAGCCTAGATTTTAATTTGTGTGTGTGTGTGT
ATATATATATGTTGGGAGATCACGCTCCTATTCGCTTTACTGTGTTATCT
TTCATCTTTTTGTCTTAGATGTCTCAATTCATCCCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCAGGACAGCCAGGGCTATTGCACAAAACAAGCAGACAACAAACAAG
AAGGAAAGAGCCGGGCGTGGTGGCGCATGCCTTTAATCCCAGAACTTGGG
AGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAG
TGAGCTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAC
CAAAAAAAAAAAAAAAGAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA
GGAAGGAAGGAAGGAAGGAAGGAAGGAAAACTCTATCCTCTGATAAAGCT
CAGGCTGTCATATATACTTTATAATTTAGCAATTCTAATCGAAGCCCACC
TGGCAGAAATGTGTGTGTACCACGAGAGGTAAAGAAGGAAGTGCATATTA
AGCACACTGCATGCACAGAATATAAAACTCCGTCTCAGTATATGGAACAA
AAGTACAATCCAGATTCTATAGAACCATGTGGAATGAGGATTCTGCAACA
GTCCGCAGGATCACCTCGAGGACAGCATTCCAATAACACTCAGTTCGACT
TGTGGACAATTTTGCTCAACTGCCATCCTTTTGTCACCTTCTACTCTACT
TTATTTACTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_n09.b1 MSMg01no074_n09.b1 CHROMAT_FILE:
MSMg01no074_n09.b1 PHD_FILE: MSMg01no074_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:20 2005
         (312 letters)



>mm_chr12_103233588_103234303
          Length = 716

 Score =  489 bits (253), Expect = e-143
 Identities = 300/325 (92%), Gaps = 17/325 (5%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatctactccaagagatgttttaaaaaag-atatagtagtaacatttaa---aa 60
           ||||||||||||||  |||||||||||| |||||| |||||||||||||||||||   ||
Sbjct: 348 gaattcaatctactaaaagagatgtttttaaaaagtatatagtagtaacatttaaaataa 289

                                                                       
Query: 61  taagaactgggcaacctcatcaacatgcaacaactgaattagcagtttttatcatcagag 120
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 taagaactgggcaaattcatcaacatgcaacaactgaattagcagtttttatcatcagag 229

                                                                       
Query: 121 taccttgaaaactagagaatccttggggctggcgagatggctcagtgaggaaaacacttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 taccttgaaaactagagaatccttggggctggcgagatggctcagtgaggaaaacacttc 169

                                                                       
Query: 181 actgccatgaaggccccataacctaagctccaaccctagaacccactgtgcaaggagaga 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 actgccatgaaggccccgtaacctaagctccaaccctagaacccactgtgcaaggagaga 109

                                                                       
Query: 241 accaactccataaagttgtccttggacttccatgagtgcac-------------acgtgt 287
           |||||||||| |||| |||||||||||||||||||||||||             ||||||
Sbjct: 108 accaactccagaaagctgtccttggacttccatgagtgcaccatgtgtatatacacgtgt 49

                                    
Query: 288 atatacataacgatttaaaaacata 312
           |||||||||||||||||||||||||
Sbjct: 48  atatacataacgatttaaaaacata 24


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 716
Length adjustment: 9
Effective length of query: 303
Effective length of database: 707
Effective search space:   214221
Effective search space used:   214221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)