BAC Information

Click to search

BAC

Clone NameMSMg01-075B15
Chromosome12 (Build37)
Map Location 69,092,652 - 69,092,972
singlet/doubletsinglet
Overlap genenone
Upstream geneMdga2, LOC100040745
Downstream geneLOC100040681, LOC100040696
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075B15.T7 (MSMg01no075_b15.b1)MSMg01-075B15.TJ (MSMg01no075_b15.g1)
ACCAG297999AG298000
length672708
length of high quality
(start - end)
494 (41 - 534)322 (75 - 396)
definitionCHROMAT_FILE: MSMg01no075_b15.b1 PHD_FILE: MSMg01no075_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:41 2005CHROMAT_FILE: MSMg01no075_b15.g1 PHD_FILE: MSMg01no075_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGATTCC
AGCCTAACAATAGACTGCCCATAGTGGGCATGGGCCTCATGTCAATCATT
AATAAATAAAATGACCCACAGACTTGCTACAGGACAATCTGAAGGAGGAT
TATTTTTTTCTATTAATTTATTTACTAATCCACTTTATATTCTAATCTCA
AACCCCACCTCTCTTCTCAAACTCAACAGCCCCTCCTCCCATCCCTTCTC
TCTTTCTCCTCTGAGAAGGGGAGGACCTCCCGAGTACCAATCCATCTTAA
CAACTCCAGTCACTGCAGAACTAGCCACGCACATCTTCCAATGAGGCCAG
TTAGGGAAACAGGATTGACAGGCAGGCAACAGTCAAAGTATGTCCAGAGT
TAGGGGACTGCATGAAGATGAAGCTGCAGATCTGCTAAAATTTGTACAGA
GAGCCTAGGTCCAGCCCATGTATGCTCTTTGGTTGGTGGTTCAGGCTCTG
GGAGCTCCTACGTGTTCACACTAGTTGACTCTGTCTTCTTGTGGAGTCCT
TGTCTCCTGGTTCCTCAATCCTTTCTCCCAACTCTTCCATAAGACTTTCT
GAGTTCTGTCTAATGCGGGGCTGTGTATCTCTGCACCTTTTTTTCCTCAG
GTACTGTCTGAAAGCTCTCAAC
NCGATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTGTATCCCAAGATCTTAAAAGCAC
GGGTTCACTATTCTCTTGCTGTCCACACACCATGATTCACAAACTTTTGT
ACACTGCTTTCTTTTGAACTTTCTAATTTCTAGCTCCTGAGTGTGTTAGA
ATTATGGTAATTTCATCTACCTGAAACATGTAATAGCAAAATAGGCTGAT
TGTTTATGCATCATTGAATTGTGTATAATACATCTGAGTAATAACATTTA
AGTTAAATTTTAGTACTATATAAAACTCAAAGACATGATAAACCATGTTA
TTACCTGAATTTTATCCAACTTTTATTTCCCTGTTTTCATATTTTACTGA
AATACTTTCATTACCCCCCCCCCCCGTCCTTTTGCCTTACTCCAAATAAA
TTATTTATTTCTAGTTGATTTCGTTTTATATCCCCCTCTCCATTTCCGCA
TTGATCACCCAACTGATAGTCTAATTACCAATTCTTTCTTTATCTCCTTC
CTCACTTCTTTTATCCTCTTACATTTTCCTCTTCTCCTCATCCTCACCCC
GCCTCGCCTCTCATTTTCTTTTCTTACTCTTTTTTCCTTTTTTTCTTCCG
CTCACTTTCTCTTTTTATATTTTCTCTTCACCACTTTTTCGCTTCTCATA
TCAGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_b15.g1 MSMg01no075_b15.g1 CHROMAT_FILE:
MSMg01no075_b15.g1 PHD_FILE: MSMg01no075_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:41 2005
         (322 letters)



>mm_chr12_69092452_69093172
          Length = 721

 Score =  600 bits (310), Expect = e-176
 Identities = 319/322 (99%), Gaps = 1/322 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtatcccaagatcttaaaagcacgggttcactattctcttgctgtccacacaccatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgtgtatcccaagatcttaaaagcacgggttcactattctcttgctgtccacacaccatg 462

                                                                       
Query: 61  attcacaaacttttgtacactgctttcttttgaactttctaatttctagctcctgagtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 attcacaaacttttgtacactgctttcttttgaactttctaatttctagctcctgagtgt 402

                                                                       
Query: 121 gttagaattatggtaatttcatctacctgaaacatgtaatagcaaaataggctgattgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gttagaattatggtaatttcatctacctgaaacatgtaatagcaaaataggctgattgtt 342

                                                                       
Query: 181 tatgcatcattgaattgtgtataatacatctgagtaataacatttaagttaaattttagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tatgcatcattgaattgtgtataatacatctgagtaataacatttaagttaaattttagt 282

                                                                       
Query: 241 actatataaaactcaaagacatgataaaccatgttattacctgaattttatccaactttt 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 281 actgtataaaactcaaagacatgataaaccatgttattacctgaattttatccat-tttt 223

                                 
Query: 301 atttccctgttttcatatttta 322
           ||||||||||||||||||||||
Sbjct: 222 atttccctgttttcatatttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 721
Length adjustment: 9
Effective length of query: 313
Effective length of database: 712
Effective search space:   222856
Effective search space used:   222856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)