BAC Information

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BAC

Clone NameMSMg01-075B24
Chromosome12 (Build37)
Map Location 91,328,604 - 91,491,447
singlet/doubletdoublet
Overlap geneNrxn3
Upstream genenone
Downstream geneLOC100039498, LOC100039287, Dio2, LOC100039295, 4930544I03Rik, 4930534B04Rik, 5430427M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075B24.T7 (MSMg01no075_b24.b1)MSMg01-075B24.TJ (MSMg01no075_b24.g1)
ACCAG298017AG298018
length682763
length of high quality
(start - end)		531 (49 - 579)119 (188 - 306)
definitionCHROMAT_FILE: MSMg01no075_b24.b1 PHD_FILE: MSMg01no075_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:42 2005CHROMAT_FILE: MSMg01no075_b24.g1 PHD_FILE: MSMg01no075_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,328,604 - 91,329,128)(91,491,329 - 91,491,447)
sequence
ATAAAAAAATCTATAATTGCGGCGCTATACGACTCCTATATCCAGAGGAT
CCGCGGAATTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGC
CTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGAGCACCACCACTGCC
CAGCTCAAGAAATAAATCTTACTCTCTTGTTTCTATCTGGTCTTTTGGTC
ACAATAATACCCAATGATCTTAAGACCCCGTAATAGACCCCATTTCCTAA
ATATTCCCCATTCTGGGCAACATACTTCTGTCACATGAACCTTTTGGGAA
TACTTAAGACCTAAGCTATAGAATCCTGTATTCTTTGTTTTGTCTTTATT
ATTACCAGTCTCTCTGCATATTTCAAATGTATTGCTTAAACAAAGACATA
TATCATTCTACAGTGTTAGAAACCTGTACTCTGCATATTAATGAAATGCT
AATCAGTGTGAAACATTAATTACCTCAGGGGAATGGGGGTGCTAATTATG
TAACTGAGATTTTTAAAAATACTATTCCATGTAAAATGTACTGGCTATTA
AATAATAAGTGATAAAATGTGTCAATTTGGACCTTACACATAGAATATTA
AAATCAGCAATGATGACTGCTGTAAATATTTAAAGCCTTGTTTCATTCAA
GATTGTGTGTGAGCTTTTGTGTGTGTATATGA

NNNNNNNNNCCCCNNNNNTTTTTTCCCTTTTNTTCCCCCTTCCCCCCNCN
CATAANNAAAAAAAGCAGCTATGTGTAXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCCCGCAACTCCTATGTAGTGCTAT
CTTCCTTTAGATTCAGAACTTAAACTTGCATGAAACGCTGACAGATATTC
TTTTGTAGATGAGCAGATTTAGTCATTTCAATCCTATACATAGGATCTAG
AATGTAGCCTCATGTTGCTTTCCCAGAATATACAATGCCTTGGTTTTATC
CTCAGCATAGACCTAACCAAAATATAAGTTAGTTGACTCAGAACTGGGCA
TTATAACTTACCTGTGAAGAATTCTAGCGAGATGCATTCCTGCAGACATC
AATCCACTCATTGTTGTTCAATCTTCCAATGTCTACAAACACCTGCTGTG
ATGCCGTAATACAGTGGTCCTCCTGTGTCATCCACCTGCAACAGATATCT
TCCCTTGCGCCTTCACAACCGCCACCTTTAACTGGCTCTTGAATCACAAT
CTACCCCTTTTTGGAGACAGCGGCTTGCCTGAGGCGCTCGCGACCTCGCA
CGCCCCAAACCCCCATCTTGCCCCGGCCCAAACATTTCGGCCGCCTATTA
GAAATAACGTTCTTTCCCCACTTGATCCCCCGGCCAACGCCCGCCGCGCC
ATGATATCCTTTCCTCCACCCTTGCTTCCGGTACAACTTCCCTGCGTACC
CCTCCTCGTGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_b24.b1 MSMg01no075_b24.b1 CHROMAT_FILE:
MSMg01no075_b24.b1 PHD_FILE: MSMg01no075_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:42 2005
         (531 letters)



>mm_chr12_91328398_91329328
          Length = 931

 Score =  953 bits (493), Expect = 0.0
 Identities = 517/525 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaattcactttgtagaccaggctggccttgaactcagaaatctgcctgcctctgcctcc 66
           ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcactttgtagagcaggctggtcttgaactcagaaatctgcctgcctctgcctcc 266

                                                                       
Query: 67  caagtgctgggattaaaggcgagcaccaccactgcccagctcaagaaataaatcttactc 126
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 267 caagtgctgggattaaaggcaagcaccaccactgcccagctcaagaaataaatcttactc 326

                                                                       
Query: 127 tcttgtttctatctggtcttttggtcacaataatacccaatgatcttaagaccccgtaat 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcttgtttctatctggtcttttggtcacaataatacccaatgatcttaagaccccgtaat 386

                                                                       
Query: 187 agaccccatttcctaaatattccccattctgggcaacatacttctgtcacatgaaccttt 246
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 387 agaccccatttcctaaatattccccattctgggcaacatacttttgtcacatgaaccttt 446

                                                                       
Query: 247 tgggaatacttaagacctaagctatagaatcctgtattctttgttttgtctttattatta 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 447 tgggaatacttaagacctaagctatagaatcctgtattctttgttttgtctttattattg 506

                                                                       
Query: 307 ccagtctctctgcatatttcaaatgtattgcttaaacaaagacatatatcattctacagt 366
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ccaatctctctgcatatttcaaatgtattgcttaaacaaagacatatatcattctacagt 566

                                                                       
Query: 367 gttagaaacctgtactctgcatattaatgaaatgctaatcagtgtgaaacattaattacc 426
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gttagaaacctatactctgcatattaatgaaatgctaatcagtgtgaaacattaattacc 626

                                                                       
Query: 427 tcaggggaatgggggtgctaattatgtaactgagatttttaaaaatactattccatgtaa 486
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 627 tcaggggaatgggggtgctaattatgtaactgagatttttaaaaatcctattccatgtaa 686

                                                        
Query: 487 aatgtactggctattaaataataagtgataaaatgtgtcaatttg 531
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aatgtactggctattaaataataagtgataaaatgtgtcaatttg 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no075_b24.g1 MSMg01no075_b24.g1 CHROMAT_FILE:
MSMg01no075_b24.g1 PHD_FILE: MSMg01no075_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:42 2005
         (119 letters)



>mm_chr12_91491129_91491647
          Length = 519

 Score =  215 bits (111), Expect = 9e-61
 Identities = 117/119 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgacagatattcttttgtagatgagcagatttagtcatttcaatcctatacataggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctgacagatattcttttgtagatgagcagatttagtcatttcaatcctatacataggatc 260

                                                                      
Query: 61  tagaatgtagcctcatgttgctttcccagaatatacaatgccttggttttatcctcagc 119
           ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 259 tagaatgtagcctcatgttgctttttcagaatatacaatgccttggttttatcctcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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