BAC Information

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BAC

Clone NameMSMg01-075D23
Chromosome12 (Build37)
Map Location 69,299,042 - 69,299,215
singlet/doubletsinglet
Overlap genenone
Upstream geneMdga2, LOC100040745, LOC100040681
Downstream geneLOC100040696, LOC665967, LOC665973, Rps29, Ppil5, Rpl36al, Mgat2, 1110034A24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075D23.T7 (MSMg01no075_d23.b1)MSMg01-075D23.TJ (MSMg01no075_d23.g1)
ACCAG298111AG298112
length663729
length of high quality
(start - end)
567 (42 - 608)192 (79 - 270)
definitionCHROMAT_FILE: MSMg01no075_d23.b1 PHD_FILE: MSMg01no075_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:52 2005CHROMAT_FILE: MSMg01no075_d23.g1 PHD_FILE: MSMg01no075_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGCCAACTGCTCATATATCTATTCCAATTATGTATTATCAGACTGGGGA
AATAACCCAGGATGAGTCTGGGAACCCACTGGAACTACTGGAATCAGACT
TCAGCCAAAATATCATTGTTCAACTGAGCTTTATAAGCCCATACTTTAAG
TTGAAAGTAAATATGTTTTTTTGGGATATCCTAGATTCAGTGTGAATACA
GAATCAGTATCCAAAAAAAAAAAATCTGATTGTTTTCTTTCGCCCAGTGT
TCAGTTACCCTTGTCCCTCTGGAGAAGGAATGGATAAAATCTACCAGTAA
AACTATGAGATATTTTATCAAAACCTTTCCTCAGAGGAAGCAGGCCATCC
CTCCATTCAAGGGGTTTTGGGTAGTCAAACTGGCTCAAGCCTGGAAAATT
GAGTCACAGACCAAGATTCTCTTTAACCACAATTCAATGTACCTTTCTTT
CATTTCTTTGTTTGAAATGTTTTCTGCTTATACAGACCAAACAAAAATTC
AGTAGCCTTTTTAATCTATATCTTACTTGAAAACACCATGATTGGTTAGC
CAATGCCTAATGCACATTACAAGTCATGCCACCATAAGAATAAATTTGCC
TGTGCTGATAATT
AAAACGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATGCTCAGCTGGGAATAGTG
TGAGCCAGACCTCAGAAGGGAATAGGAGAATCAAGAGAAAACAACCAAAT
AGTCCCAGATTTCAGCTTATCCAGACTAAAACAGTTCCTGAGCTTATGTT
AAATATGCGATTTTAATTTGTTTATTTTATAAATGTGAGTGAGTGAGTGT
GTGTGTGTGTGTGTGTGNGCCNCNCTCCTCTCCTCCCCTCTTTCCCCTTT
CACCACATTTATTACCCAAACCAAAATATTTTTTCTTTCTCCAAACCACA
CCCCACCCCCATATCTTCTCCCCTTCCTCCTCCCCTTTCCTCTCTACTCC
CCTCTCCCCATCTCTTCATCCCCCCCCTCCTTCCTCCCCCTTTTTTTATC
TTTTCCTATTATATTTTATTTTCTACTCCCTCACTTCTCCCCCGCTAATC
TCACCCATATTTATACCTCTATTTTTCCTCGCTCTTCCCTTTCTCTTTCT
TCTCCCCTCAACACCCCTTGTTATCTTTCTCCCTTTTTTATCTCTATATC
CTTCATTACCCTCCCACATACTTATTCTACAACAATATCTCTCCCATATA
CCCCACAATATATATTTATCACTACTTTTTCGTTCCTTATTTATCTTTCA
CATTTCTCTTCTTGTTCCTCTCACTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_d23.g1 MSMg01no075_d23.g1 CHROMAT_FILE:
MSMg01no075_d23.g1 PHD_FILE: MSMg01no075_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:52 2005
         (192 letters)



>mm_chr12_69298861_69299452
          Length = 592

 Score =  329 bits (170), Expect = 8e-95
 Identities = 173/174 (99%)
 Strand = Plus / Minus

                                                                       
Query: 16  aatagtgtgagccagacctcagaagggaataggagaatcaagagaaaacaaccaaatagt 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aatagtgtgagccagacctcagaagggaataggagaatcaagagaaaacaaccaaatagt 296

                                                                       
Query: 76  cccagatttcagcttatccagactaaaacagttcctgagcttatgttaaatatgcgattt 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cccagatttcagcttatccagactaaaacagttcctgagcttatgttaaatatgcgattt 236

                                                                 
Query: 136 taatttgtttattttataaatgtgagtgagtgagtgtgtgtgtgtgtgtgtgtg 189
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 235 taatttgtttattttataaatgtgagtgagtgtgtgtgtgtgtgtgtgtgtgtg 182


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)