BAC Information

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BAC

Clone NameMSMg01-075E12
Chromosome12 (Build37)
Map Location 51,290,443 - 51,444,246
singlet/doubletdoublet
Overlap genePrkcm
Upstream geneLOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
Downstream geneLOC100039517, LOC636070, LOC100039525
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075E12.T7 (MSMg01no075_e12.b1)MSMg01-075E12.TJ (MSMg01no075_e12.g1)
ACCAG298137AG298138
length698691
length of high quality
(start - end)
281 (75 - 355)516 (80 - 595)
definitionCHROMAT_FILE: MSMg01no075_e12.b1 PHD_FILE: MSMg01no075_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:54 2005CHROMAT_FILE: MSMg01no075_e12.g1 PHD_FILE: MSMg01no075_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,443,966 - 51,444,246)(51,290,443 - 51,290,958)
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATCCGCGG
AATTCTCAAGGTTTTTACTTTCAGGTTTTACCATTACCACTATATTGCTC
TTATATCTCCATATTAACAGATATTATTAGGACTATGTAAATTACATATT
CATTACATAATTGGTAACTATTTTTAATCATGATTAATTTTCAGCCATTG
ATCTTATCAATAACTTGCTACAAGTGAAAATGAGAAAACGCTACAGTGTG
GATAAAACCTTGAGTCACCCTTGGCTACAGGTAAAAATCATCTGTGGTTT
GTTTTTTGTGGGCCCTTCTCCTTTTATTTATATATAAGACTTTTTTATAT
TAGCTGTAAAAATCTTTTGTCATGTTTATACAGGTATAATTACCCTAATA
CTGTTTTTTTTTCTCACAACCCCCACGATTCCTTCCGATTTAATACCAGC
GTATTGTTTCTAAATGTCCTTCTTTCTACCAGGAAGATTTGATGAAGGTG
CACACATACACGGAACACGTGCACAGAGCTCCCCCTGCCATACATATGCA
CCAACTTGTTTACCCTCTTCTCACCAAGGGTCATAGCAGAACTCTTTATA
CCCCACCTTGTAAAGCACCTGCATGCCTACTCCCTGATAGCTGCCCCCAC
TATATGCCCCATCTGTCTCATTTGCCTGGCCCCATTTCGCAAAGCTAT
NCCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGAAAGATCTCCTATGAA
AAATAGATCCTTTGTGTATATTTAAATTAAAAAAGGATTGCATATAACTT
TACAGGTTTTCTCTTGCTTACTATTTTTCTTTATCCATATCTTGACTGAG
GCACTCATTGCCTCTCTACCTTAGACACAATATTTAAAAGCCTTTGACAG
AACTGAAGCTGTGAAATGCTTTCCCAGAGTGATGCTGTTGATTTTGACAA
CAAAATAATGATTTGGTCATCATGTATTATTTGAATGTGTGTTTAGATTT
CCAGACAGAATGATTCTTACAGAAAAATAAATAAATAACAGAGGAATTCG
CTTTTACACCTTACGGTATCTCTACCCCCTGTGTAGTATTGTTTACCTTA
CCATAGATTTTTAAATGGAGATGCCTCGATTTAATTTTATGCATTTCAAT
ATATGTTCACCTAGATAACCTATTTGAGTTTTGTTGTTGTTGTGTGTTTG
AATTTTCTTGAACAGTTAAATCTGGTAGTAACATTTTCTGGTTCCAGCAG
GTGAGTGAACTAATTTAAGCTAATTTATGGGTTAAAACCCTGACATATGG
CAAAGCCACTTTTTCTTCAATGTGAATTCAACACAGGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_e12.b1 MSMg01no075_e12.b1 CHROMAT_FILE:
MSMg01no075_e12.b1 PHD_FILE: MSMg01no075_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:54 2005
         (281 letters)



>mm_chr12_51443766_51444446
          Length = 681

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttttaccattaccactatattgctcttatatctccatattaacagatattattaggact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gttttaccattaccactatattgctcttatatctccatattaacagatattattaggact 422

                                                                       
Query: 61  atgtaaattacatattcattacataattggtaactatttttaatcatgattaattttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgtaaattacatattcattacataattggtaactatttttaatcatgattaattttcag 362

                                                                       
Query: 121 ccattgatcttatcaataacttgctacaagtgaaaatgagaaaacgctacagtgtggata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccattgatcttatcaataacttgctacaagtgaaaatgagaaaacgctacagtgtggata 302

                                                                       
Query: 181 aaaccttgagtcacccttggctacaggtaaaaatcatctgtggtttgttttttgtgggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaccttgagtcacccttggctacaggtaaaaatcatctgtggtttgttttttgtgggcc 242

                                                    
Query: 241 cttctccttttatttatatataagacttttttatattagct 281
           |||||||  ||||||||||||||||||||||||||||||||
Sbjct: 241 cttctccaattatttatatataagacttttttatattagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no075_e12.g1 MSMg01no075_e12.g1 CHROMAT_FILE:
MSMg01no075_e12.g1 PHD_FILE: MSMg01no075_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:54 2005
         (516 letters)



>mm_chr12_51290243_51291158
          Length = 916

 Score =  959 bits (496), Expect = 0.0
 Identities = 511/516 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagaaagatctcctatgaaaaatagatcctttgtgtatatttaaattaaaaaaggatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aaaagaaagatctcctatgaaaaatagatcctttgtgtatatttaaatttaaaaaggatt 260

                                                                       
Query: 61  gcatataactttacaggttttctcttgcttactatttttctttatccatatcttgactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatataactttacaggttttctcttgcttactatttttctttatccatatcttgactga 320

                                                                       
Query: 121 ggcactcattgcctctctaccttagacacaatatttaaaagcctttgacagaactgaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcactcattgcctctctaccttagacacaatatttaaaagcctttgacagaactgaagc 380

                                                                       
Query: 181 tgtgaaatgctttcccagagtgatgctgttgattttgacaacaaaataatgatttggtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgaaatgctttcccagagtgatgctgttgattttgacaacaaaataatgatttggtca 440

                                                                       
Query: 241 tcatgtattatttgaatgtgtgtttagatttccagacagaatgattcttacagaaaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatgtattatttgaatgtgtgtttagatttccagacagaatgattcttacagaaaaata 500

                                                                       
Query: 301 aataaataacagaggaattcgcttttacaccttacggtatctctaccccctgtgtagtat 360
           ||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 501 aataaataacagaggaattcgcttttacaccttacggtatctctatctcttgtgtagtat 560

                                                                       
Query: 361 tgtttaccttaccatagatttttaaatggagatgcctcgatttaattttatgcatttcaa 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 tgtttaccttaccatagatttttaaatggagatgcctcgacttaattttatgcatttcaa 620

                                                                       
Query: 421 tatatgttcacctagataacctatttgagttttgttgttgttgtgtgtttgaattttctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatatgttcacctagataacctatttgagttttgttgttgttgtgtgtttgaattttctt 680

                                               
Query: 481 gaacagttaaatctggtagtaacattttctggttcc 516
           ||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaacagttaaatctggtagtaacattttctggttcc 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)