BAC Information

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BAC

Clone NameMSMg01-075F03
Chromosome12 (Build37)
Map Location 113,115,646 - 113,276,069
singlet/doubletdoublet
Overlap genePpp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9
Upstream gene2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21
Downstream geneA530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075F03.T7 (MSMg01no075_f03.b1)MSMg01-075F03.TJ (MSMg01no075_f03.g1)
ACCAG298167AG298168
length684681
length of high quality
(start - end)		393 (64 - 456)533 (74 - 606)
definitionCHROMAT_FILE: MSMg01no075_f03.b1 PHD_FILE: MSMg01no075_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:57 2005CHROMAT_FILE: MSMg01no075_f03.g1 PHD_FILE: MSMg01no075_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,275,731 - 113,276,069)(113,115,646 - 113,116,178)
sequence
AAATTTGCGGCGCTATACGACTCCTATATTCAGAGAGATCCGCGGAATTC
CAGGAGATACCCGGCTCCTCCTTGTGTTGATCGGTAGGCTCGAAGTCACA
GACAGCATCAGGCACAAATGTCAGCAGTCAGACTTGAACAAAGACAGACA
GGATCTTTGAAGGCTAAGCCCACTCTTCTTCCAAGAGGTCAGAGCAAAGC
TTGGGCTGATGAAATGGCTTTGCTGGTAAAGTGCCTGCACAGACATGAGG
ACCTGGGTCCTCGTGGGTCCCCAAAACCCATGGGACAAGCTGGAGGTAAC
ACCTACCGCCTCGGTAGATGCAGCCGCTTCCTGGAGCGCACTGGCCAGGC
CAGCTGACCGAAGGGATGAGCTCCAGGTTCACTGAGTTACAAAGTTACAA
AGACAGCTCATCAACTGCTCATCAACCACACACAGCCACACCTCTAACTA
ACAAGTACATGATCCACAGACAGCAAACAACCCAGGAAAAGAACCCACAA
CACCACACACTAGATGCATCTGGAGTGCCTGTGTCTTTCCCTTCACCTCA
CCTGTTCCTAGTCACAACACCCTTTCTGGAATCACAAAGATCACACCGCA
AGAATAGATTAAGTTTTAATCTTTTGAAGAAAAAATAATAAATGCATTCA
GACCTAGCATCTCTGTGAATTCTAAGCCAGCCAA

CCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAGGACCCACATGGCATTTAACAACT
GTCTATAACTCCAGTTCAGGGATATCTGATACCCTCTACTGGTCTTGGAA
GCCTCCTGCACATACATGGCACACATGTATACATACATGCAGGGCAGATA
CTCATATACATAAAGTAAAGAGATGTTAAGAGAGAGAAAAAAGGCAAACA
GAAACATCCTCAGTCTCTGGGCACAACATCACTGTTACTGATGGAGCCCG
AGCCAGCAGAGCCGGCACCTCTGCAAAGCAACCTAAGTGGATGCTGCTGC
GCCTGCCATTAGATACATTACTTTGTCTCCATGCATGCTGCCCTGATGCT
GGACCGGACCACTGCACTCAGCTGCTCAGCGCTCATCAGAGCTCCCCCTA
ACCAATCTAACTAAAGGAACTCCATCTGTTACCTGTCTCTTACCTGGCTC
AGGGTTCAAATGCTTATCCATTTCCTGAGAACAGAGATCCTGGTCAGCCT
TCAGCTGTGTCATCAGTACCTGGATCAGCACCGGGCATAAAGCATGGATT
GACTACATAAAATCCCCCAGCTATATGATTTGGTAGGACTTTTGAATCCT
GAAGGATATGTGTTTGCCTGGCTTTTTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_f03.b1 MSMg01no075_f03.b1 CHROMAT_FILE:
MSMg01no075_f03.b1 PHD_FILE: MSMg01no075_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:57 2005
         (393 letters)



>mm_chr12_113275731_113276523
          Length = 793

 Score =  656 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctcctccttgtgttgatcggtaggctcgaagtcacagacagcatcaggcacaaatgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gctcctccttgtgttgatcggtaggctcgaagtcacagacagcatcaggcacaaatgtca 280

                                                                       
Query: 61  gcagtcagacttgaacaaagacagacaggatctttgaaggctaagcccactcttcttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gcagtcagacttgaacaaagacagacaggatctttgaaggctaagcccactcttcttcca 220

                                                                       
Query: 121 agaggtcagagcaaagcttgggctgatgaaatggctttgctggtaaagtgcctgcacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 agaggtcagagcaaagcttgggctgatgaaatggctttgctggtaaagtgcctgcacaga 160

                                                                       
Query: 181 catgaggacctgggtcctcgtgggtccccaaaacccatgggacaagctggaggtaacacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 catgaggacctgggtcctcgtgggtccccaaaacccatgggacaagctggaggtaacacc 100

                                                                       
Query: 241 taccgcctcggtagatgcagccgcttcctggagcgcactggccaggccagctgaccgaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  taccgcctcggtagatgcagccgcttcctggagcgcactggccaggccagctgaccgaag 40

                                                  
Query: 301 ggatgagctccaggttcactgagttacaaagttacaaag 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 39  ggatgagctccaggttcactgagttacaaagttacaaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no075_f03.g1 MSMg01no075_f03.g1 CHROMAT_FILE:
MSMg01no075_f03.g1 PHD_FILE: MSMg01no075_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:57 2005
         (533 letters)



>mm_chr12_113115446_113116378
          Length = 933

 Score = 1031 bits (533), Expect = 0.0
 Identities = 533/533 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaggacccacatggcatttaacaactgtctataactccagttcagggatatctgatacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaggacccacatggcatttaacaactgtctataactccagttcagggatatctgatacc 260

                                                                       
Query: 61  ctctactggtcttggaagcctcctgcacatacatggcacacatgtatacatacatgcagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctactggtcttggaagcctcctgcacatacatggcacacatgtatacatacatgcagg 320

                                                                       
Query: 121 gcagatactcatatacataaagtaaagagatgttaagagagagaaaaaaggcaaacagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagatactcatatacataaagtaaagagatgttaagagagagaaaaaaggcaaacagaa 380

                                                                       
Query: 181 acatcctcagtctctgggcacaacatcactgttactgatggagcccgagccagcagagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatcctcagtctctgggcacaacatcactgttactgatggagcccgagccagcagagcc 440

                                                                       
Query: 241 ggcacctctgcaaagcaacctaagtggatgctgctgcgcctgccattagatacattactt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcacctctgcaaagcaacctaagtggatgctgctgcgcctgccattagatacattactt 500

                                                                       
Query: 301 tgtctccatgcatgctgccctgatgctggaccggaccactgcactcagctgctcagcgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtctccatgcatgctgccctgatgctggaccggaccactgcactcagctgctcagcgct 560

                                                                       
Query: 361 catcagagctccccctaaccaatctaactaaaggaactccatctgttacctgtctcttac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catcagagctccccctaaccaatctaactaaaggaactccatctgttacctgtctcttac 620

                                                                       
Query: 421 ctggctcagggttcaaatgcttatccatttcctgagaacagagatcctggtcagccttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggctcagggttcaaatgcttatccatttcctgagaacagagatcctggtcagccttca 680

                                                                
Query: 481 gctgtgtcatcagtacctggatcagcaccgggcataaagcatggattgactac 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctgtgtcatcagtacctggatcagcaccgggcataaagcatggattgactac 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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