BAC Information

Click to search

BAC

Clone NameMSMg01-076A05
Chromosome12 (Build37)
Map Location 53,785,032 - 53,785,146
singlet/doubletsinglet
Overlap genenone
Upstream geneStrn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5
Downstream geneAkap6, Npas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076A05.T7 (MSMg01no076_a05.b1)MSMg01-076A05.TJ (MSMg01no076_a05.g1)
ACCAG298691AG298692
length837955
length of high quality
(start - end)
76 (100 - 175)122 (127 - 248)
definitionCHROMAT_FILE: MSMg01no076_a05.b1 PHD_FILE: MSMg01no076_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:50 2005CHROMAT_FILE: MSMg01no076_a05.g1 PHD_FILE: MSMg01no076_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTTTTTTCAATCTCACAACTATTCCTTCCCCCCCCCCCNNTGGTNNGN
TTTTCTATAATTGCGGCGCTAAACGACTCACTATATCCAGAAATCCGCGG
AATTCACATTGTATACCGCTCGACTTTTTTTGTTCAAAAGCTATTCTATG
TGATTGCAAGCATCTACTGTGAGCATAAAGCACCACTTCGACTGCAAGAT
AAGCTAGAACTAGATAACTATGTTTGTTTGCTCAGTCTTAGGCCATGGGC
CTCGAGTTTAACTTCTAGATTATTTATAACTTAAACACCAACAAATAAGA
AATTTTGTTCTGTTAATACCTTCTGCCTGCAACCAAGTCTAATATTGAAT
AGAATATTAATAAACATTTTGTACAATGTTTTATTTACTATTTATATCTG
TTCTCTTCCACTTGCCTTCATGTATACACCACATCTACATATTTACTACT
ACTAATAACATGTCGAATTAATCAAATTTTTTTCGTAAAAAAATAGAAAT
CTAAAAAGAAAAACAAATAATACATATTAAACGAAAAAAAATCTATATAT
TAATATTTTCTTATTAACAAATATTAATAAATATTATACAAATTACTTCT
CAATTCACCATTCTCTTTTCATTCTTTATAATGATTGCCTCTCATCTTCA
AACCCATTATACCAACACAATAATAAATACCCCCATATTACCCTTAAACA
ACTTATACACAACAACACATATCAAAATAAAATAATTTCTAATATCCTAC
ACTAACCCTCCCCTATTTTAAATAACAAAAAAATTCTTTATTCTATATTA
AAAAATAATAAAAAAAACAAAATATACATATAAAAAT
AAAACTAACAACAAATACAAATAAGCTAACGCGCCNNCCCCCCCTTTCCT
CACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGTGAGGTGAAAGGAGCCATTG
TTTAAAAAAAAAATGATTTTCGGAAATACCTACTAATTTTTCATGTCGAG
AAAATCTAAGTAAGAGAAAGATGATTCAAATTTAGAAACATAAATACTTG
TTATCTTTGCGGAGGAGGTCGATTTCTATTTTCTGAGATAGAATTTAATG
TCGTAAGTGCTGCTATGTAGTGATATAGTTACACGTGTAGTATACTATGC
ACCATCGTTCGCTATTGTGTTGAGGTCGCCCAACCAATATGGGTGGTTGG
TGTGTTCTTATTCTCCTAATCACTAATTAAAATCCATTTTTTTACTAAAA
TAAAAATATATTATATATTGTATCATAAACACACACATAAATTGTGAAAC
AGTGTTATGTGAGGTTGTTATTTAAACTTATTTATTAATAAATATTCTAT
AATTTTTTTTATTATCTTATTTATAATTCTATCACTTTCCCCCACTTTTT
ATATATACTCCTCTCTCCATCCACAATAATATCCGCCCTGCTCTATCTTA
ACCTTTATTATCTTATCATACCCTTAACTCCCTTATCTCTTTTTTTTATT
GTCCCTTCATTTCTTCATTTCACCCCACCACTTCACTTGACTCTTCACTA
CCCTCTGTCTACTACAATTATCTTGTATCCGCAACAACAAAACTTAAACC
TGCGTTTCTTCTTCTTTTCCTAATTAAATTCGTGTCCTTCAATACCAACT
ATCAAATTAACAAAATACGCATCGACACCTGTTCGATTCAATATATATAT
GTCATTTAACTAACTCTTACTTCAGCACTTAGTCAATATGAATTCTTCTT
CTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_a05.g1 MSMg01no076_a05.g1 CHROMAT_FILE:
MSMg01no076_a05.g1 PHD_FILE: MSMg01no076_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:50 2005
         (122 letters)



>mm_chr12_53784832_53785348
          Length = 517

 Score =  194 bits (100), Expect = 2e-54
 Identities = 115/120 (95%), Gaps = 5/120 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtgaggtgaaaggagccattgtttaaaaaaaaaatgattttcggaaatacctactaa 60
           ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 315 catgtgaggtgaaaggagccattgtttaaaaaaaaaa-gatttt-ggaaatacctactaa 258

                                                                       
Query: 61  tttttcatgtcgagaaaatctaagtaagagaaagatgattcaaatttagaaacataaata 120
           |||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 257 tttttcatgt-gagaaaatctaag-aagagaaagatgattcaaattta-aaacataaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 517
Length adjustment: 8
Effective length of query: 114
Effective length of database: 509
Effective search space:    58026
Effective search space used:    58026
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)