BAC Information

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BAC

Clone NameMSMg01-078A21
Chromosome12 (Build37)
Map Location 38,588,665 - 38,589,013
singlet/doubletsinglet
Overlap genenone
Upstream geneMeox2, A530016O06Rik, LOC100043139
Downstream geneDgkb, LOC668824, LOC100043142, Etv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078A21.T7 (MSMg01no078_a21.b1)MSMg01-078A21.TJ (MSMg01no078_a21.g1)
ACCAG299481AG299482
length713720
length of high quality
(start - end)
357 (36 - 392)603 (73 - 675)
definitionCHROMAT_FILE: MSMg01no078_a21.b1 PHD_FILE: MSMg01no078_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:15 2005CHROMAT_FILE: MSMg01no078_a21.g1 PHD_FILE: MSMg01no078_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCGCTATACGACTCCTATATGCAGAGATCCGCGGAATTCCTC
ATCTGATACAGCATTTTTCTTCAGAAATTCAAATATTACACCAATTTCCC
TGAAGCTCACTACTTCAAAGATTAGGAATTTCTTTGCTGCTTTCTTTCAT
GTTTATACTTGGCTTTGCTTTTCTATACTTTGAATCTGATGGCTGCAGAT
AGTGTTCTGTTCCTGTTTGTTTGTTTTATCATTTATTTTATGTTCTTTCC
TCTGCTGTTGTAACATCAAATATTTTATCTTGCCTTTCCCATTTTATCCC
TAAATCATTCTCCATCAGATTATATCCACTGTATAACAATTGCAAGTATC
CTGCAACCCTTGTGTGCCCAGNTCTTTTTTTGTCTTGATTGNTTTGTGTT
CAATTTCATGTGAACTCTTCTGTATATCTTAGAATCTTCTCTTCTCATTC
TTGCAGNCTACTGATGAGACTATAGTAAATCATTGTTTCTATTGCTGTTC
ATGGATTTTGTTTCTAGAATACTTTTAACTTCCTTAGAGACCCTATTTCG
TTATTACACTACATGTTCTGTTTAAATGCCCCCTGCATTTTTCACTGTAA
CCTTTAACACTAATCATTACTAAATTTTCTATTTAATAATTATTTGTTTT
TATAAAACAAACATACAATACATGCCTGCTGTGNTAGGCCTGTAAATCTA
CTATCTACTCCCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTAATCTCTCCAATACTTTTAATGTGAA
GGAGTTTGTATATTGTAGAAGGCTTTTTCAGTATCTATGGAAATGATCAG
CTAATTATTTTTCTTTGAGTGCTCCTCAATAGAAGAATGGATACAGAAAA
TGTGGTTCATTTACACAATGGAGCAGTACTCAGCTATTAAAAACAAGGAC
ATCCTGAATTTTTCAGGCAAATGGATGGAATTAGAAAATATTATCCTGAG
ACCCAAAAGCACATGCATGATATGTATTCACTGATAAGTAGGTATTAGCC
AAAAAAGTAAGGAATACCTAGGATACCACCCACATACTGTAAGAAGTTTA
ACAAGCAGAAAGACCCAAGTGAGGATTCTTCAGTCCCATTTAGAAGGGGA
AAATAATCACAGGAGGCAGAGGAGGGGGACTACCTGGGTGGGAGACGAGA
GGGAGGAAAGGGAACAGGATTAGGTATGGGCATCAGGACAGGAGAATAGC
CCAGAGGGCCAGGAAAATGAATGGAAGTGTGTATCAGTGAGGGGTAGAGA
GCAGGGGAGAACCTCTAGAAAGTCTCAGAGACCTGGGATGTGAGATGCTT
CCAGGATTCAATGGGAATGACCGACGACCTTAGTTGAAATGTCCAATAGT
GCGAAGATGGAGACCATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_a21.b1 MSMg01no078_a21.b1 CHROMAT_FILE:
MSMg01no078_a21.b1 PHD_FILE: MSMg01no078_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:15 2005
         (357 letters)



>mm_chr12_38588459_38589214
          Length = 756

 Score =  648 bits (335), Expect = 0.0
 Identities = 346/350 (98%), Gaps = 1/350 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcctcatctgatacagcatttttcttcagaaattcaaatattacaccaatttccct 66
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcctcatctgatagagcatttttcttcagaaattcaaatattacaccaatttccct 266

                                                                       
Query: 67  gaagctcactacttcaaagattaggaatttctttgctgctttctttcatgtttatacttg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gaagctcactacttcaaagattaggaatttctttgctgctttctttcatgtttatacttg 326

                                                                       
Query: 127 gctttgcttttctatactttgaatctgatggctgcagatagtgttctgttcctgtttgtt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gctttgcttttctatactttgaatctgatggctgcagatagtgttctgttcctgtttgtt 386

                                                                       
Query: 187 tgttttatcatttattttatgttctttcctctgctgttgtaacatcaaatattttatctt 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgttttatcatttattttatgttctttcctctgctgttgtaacatcaaatattttatctt 446

                                                                       
Query: 247 gcctttcccattttatccctaaatcattctccatcagattatatccactgtataacaatt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcctttcccattttatccctaaatcattctccatcagattatatccactgtataacaatt 506

                                                             
Query: 307 gcaagtatcctgcaacccttgtgtgcccagntctttttttgtcttgattg 356
           |||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct: 507 gcaagtatcctgcaacccttgtgtgcccggttctttttt-gtcttgattg 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 756
Length adjustment: 9
Effective length of query: 348
Effective length of database: 747
Effective search space:   259956
Effective search space used:   259956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)