TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCAACTGACCAAACCAAATGGCTGAGAAGCACCTGAAAAAATGTTCAA
CATCCTTAATCATCATGGAAATGCAAATCAAAACAACCTAGAGTTTCCAC
CTCAGACCAGTCAGAATGGCTAAGGTCAAAAACTCAGGTGATAACAGATG
CTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATT
GCAATATTATACAACCACTCTGGAAATCAGTCTGGCGGTTACTCAGAAAA
TTGGACATAGTACTACCAGAAGATAAAGCAATACCTCTCTTGGGCATATA
CCCAGAAGAGGTTCCTGTTGCGGCTGCCAGCAGCTCGCAACGTGAACGGT
TCGACTTGATATGGCTACTCGAGCTGTAAGAGAGGAATCTAGATGGGGCG
AAAGAAGAAACGGAGCTAAGACAAATTCATTCTGATCAAAGCTCAAATTT
TATTGTTGTGACACTAGTTATGAAGGAAGGGGGAGGGGACCCAATTCCCG
CCAAATAATCTCTGGTCCAGTATAAAGGTGAGCACGTGTGTGGCTCCGAA
CAGCTAAGCGGCAGGTTCCAGCAGTGGGCATGGTATAACGAATGATCAGG
ATACTCCACCCCTGAGCAAGCAGGTTTCAGGTTGGGGG

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTAAAGGTAGCAAAATGACACATGAT
AGTGTGGAGGAGGTAACTTGCAGAGTTTGTGAGGGAAGCAGTGCATAGTT
CAGTCTGACAATTCAACCATTTCATAAAACTGGGAATTTGTGTATATCAA
AGGTACTTGCATATGAGAGAAAGTAATATTGATGTCAAACTACGATCACT
GGGAGGATATGCAAACTGGTAATGATATCCTTACATAGGCAAATTGAGAA
TAACGCTGAAACAATCATATTATACAAACAATATTTGGTGGAAAGGATAT
TTCCCCCCACTTCTTATATAAATCTAATAAACTAGGTGGGATAGTGATAT
ACCATAGCTGGAATTTGGATCAATATGGCAACATAAGGTGAGAAACAATT
TTTCCCTATTCTGTTATATTCTGTGGCTGATGTTCTTAATCTAATAAAGG
ACAGGCCAACAAGGGAAAAAACATGGATTTCATTTGATATCAATATTTTA
TGGAGCAATGAGGTCTTTGAGGAATCTGTGAGTTCCTAAAGAAGTGGTTA
ACCCAGTAAGCTAGTGTACCATATCAACAAAAAAGTAACAAGTTGTGAGA
AGAGAAGAAAAGGGGGTTTGCGGATGGCTAACAGTGCTTG

Query= MSMg01no078_p15.g1 MSMg01no078_p15.g1 CHROMAT_FILE:
MSMg01no078_p15.g1 PHD_FILE: MSMg01no078_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:28 2005
         (572 letters)



>mm_chr12_102648468_102649439
          Length = 972

 Score =  584 bits (302), Expect = e-171
 Identities = 515/600 (85%), Gaps = 40/600 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaaggtagcaaaatgacacatg-------atagtgtggaggaggtaacttgcagagt 53
           |||||| |||||||||||||||| |       ||||| ||||||||||||||||||||||
Sbjct: 185 tttaaaagtagcaaaatgacacacgttataaaatagtttggaggaggtaacttgcagagt 244

                                                                       
Query: 54  ttgtgagggaagcagtgcatagttcagtctgacaattcaaccatttcataaaactgggaa 113
           ||||||||||||||||||||| ||||||||||||||||||||||||  ||| |||| |||
Sbjct: 245 ttgtgagggaagcagtgcatatttcagtctgacaattcaaccatttggtaagactgagaa 304

                                                                       
Query: 114 tttgtgtatatcaaaggtacttgcatatgagag-aaagtaatattgatgtcaaactacga 172
            | |||||||||| |||| |||| ||||||| | ||||  |||||||||||||||||| |
Sbjct: 305 ctggtgtatatcacaggttcttgtatatgag-gcaaagggatattgatgtcaaactacaa 363

                                                                       
Query: 173 tcact-gggaggatatgcaaactggtaatgatatccttacataggcaaatt-gagaataa 230
           || || |||| | |||||| ||  ||||||||||||||||||||| ||||| ||||||||
Sbjct: 364 tc-cttgggaagctatgcataccagtaatgatatccttacataggaaaatttgagaataa 422

                                                                       
Query: 231 cgctgaaacaatcatattatacaaacaatat-tt--gg-tggaaaggatatttcccccca 286
           | ||||||||| || ||| ||||||  | || ||  || |  ||| |||||||  ||| |
Sbjct: 423 ctctgaaacaaccacattgtacaaa--acatgttcaggat--aaaagatatttatcccta 478

                                                                       
Query: 287 cttcttatat-aaatctaataaactaggtgggatagtgatataccatagctggaatttgg 345
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cttctta-attaaatctaataaactaggtgggatagtgatataccatagctggaatttgg 537

                                                                       
Query: 346 atcaatatggcaacataaggtgagaaacaatttttccc-----------tattctgttat 394
           |||||||||| |||||  ||||||||||| |||||              |||||||||||
Sbjct: 538 atcaatatggaaacatggggtgagaaacacttttt---agggaaaaaattattctgttat 594

                                                                       
Query: 395 attctgtggctgatgttcttaatctaataaaggacaggccaacaagggaa-aaaacatgg 453
            |||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||
Sbjct: 595 gttctgtggctgatgttcttaatctaacaaaggataggccaacaagggaacaaaacatgg 654

                                                                       
Query: 454 atttcatttgatatcaatattttatggagcaatgaggtctttgaggaatctgtgagttcc 513
           |||||||||||||||||||||| |||||||||||||||||||||| |||| |||| ||||
Sbjct: 655 atttcatttgatatcaatattt-atggagcaatgaggtctttgagaaatcagtgaattcc 713

                                                                       
Query: 514 taaagaagtggttaacccagtaagctagtgtaccatatcaacaaaaaa-gtaacaagttg 572
           |||||||||||||||  || ||||||||| ||||||| |||||||||| |||||||||||
Sbjct: 714 taaagaagtggttaattcaataagctagt-taccataccaacaaaaaaagtaacaagttg 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)