Query= MSMg01no079_b08.b1 MSMg01no079_b08.b1 CHROMAT_FILE:
MSMg01no079_b08.b1 PHD_FILE: MSMg01no079_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:36 2005
(594 letters)
>mm_chr12_7960642_7961637
Length = 996
Score = 1035 bits (535), Expect = 0.0
Identities = 577/591 (97%), Gaps = 3/591 (0%)
Strand = Plus / Plus
Query: 6 gaattcattgtttttaatacgctgagtagtactccattgtgtaaatgtaccacattttct 65
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 207 gaattcattgtttttaata-gctgagtagtactccattgtgtaaatgtaccacatttcct 265
Query: 66 gtatccattcctctgttgaggggcatctgggttctttccaggaaaactgctgaggtgagt 125
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 266 gtatccattcctctgttgaggggcatctgggttctttccaggaaaactactgaggtgagt 325
Query: 126 cataaaatcatttggattcagcctcactgcctttttatgaccgagtagttggattactaa 185
|||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 326 cataaaattatttggattcagcttcactgcctttttatgaccaagtagttggattactaa 385
Query: 186 cttagtctcaaattttttgatctccatatttgctccatccacagcatcctgtgctcaagg 245
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cttagtctcgcattttttgatctccatatttgctccatccacagcatcctgtgctcaagg 445
Query: 246 acttacctccgacagacaaatgacagaaacaactagagaatacttagaacatttaactgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acttacctccgacagacaaatgacagaaacaactagagaatacttagaacatttaactgc 505
Query: 306 cacacctatcaaaggccactcttcagtaacagcatgttagaaacaaaaggcagagctggg 365
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cacacctatcgaaggccactcttcagtaacagcatgttagaaacaaaaggcagagctggg 565
Query: 366 tgattagattgagtttccaagatagctaattggtatgattcctggggg-aaaacaagaat 424
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 566 tgattagattgagtttccaagatagctaattggtatgattcctggggggaaaacaagaat 625
Query: 425 tg-ttcatagaaaaacaaaattggaggacctagagtggagaacagacttaagcagtctgc 483
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 626 tggttcatagaaaaacaaaattggaggacctaaagtggagaacagacttaagcagtctgc 685
Query: 484 ctgagacagagatggattgctgggcacaagtttggaaaaaagcaatgtacaaggaagata 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ctgagacagagatggattgctgggcacaagtttggaaaaaagcaatgtacaaggaagata 745
Query: 544 gtctcttgctaatctcctgtgttctgtgaagttttgcttgcctcgttcacc 594
||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 746 gtctcttgccaatctcctgtgttctgtgaagttttgcttgcctcgctcacc 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 996
Length adjustment: 10
Effective length of query: 584
Effective length of database: 986
Effective search space: 575824
Effective search space used: 575824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_b08.g1 MSMg01no079_b08.g1 CHROMAT_FILE:
MSMg01no079_b08.g1 PHD_FILE: MSMg01no079_b08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:36 2005
(540 letters)
>mm_chr12_8096070_8096999
Length = 930
Score = 924 bits (478), Expect = 0.0
Identities = 516/534 (96%), Gaps = 12/534 (2%)
Strand = Plus / Minus
Query: 1 tatggttctcttcaccttttgcaacccagaacctgagaaggaagtgctgttggtcctttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tatggttctcttcaccttttgcaacccagaacctgagaaggaagtgctgttggtcctttc 664
Query: 61 ggttgcccagaccccatggaacccacttaaaaggactgtggagttgtgcttgaaatccca 120
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 663 ggttgcccagaccccatggaacccacttaaaaggactgtggag------ttgaaatccca 610
Query: 121 aagtatcccttatgttcttcagggaatccctggatacagcaagaccaatcaatgggttgt 180
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 609 aagtatcccttatgttcttcagggaatccctggatacagcaagac----caatgggttgt 554
Query: 181 agaatggaaggatggaaggaaatcagaggtgtcctgcctcttgccagctctggaatcctc 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 553 agaatggaaggatggaaggaaatcagaggtgccctgcctcttgccagctctggaatcctc 494
Query: 241 tatcaggcagttgagaaacagctccagtgagggctgtgtggcagttttcccagggttcct 300
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgtcaggcagttgagaaacaactccagtgagggctgtgtggcagttttcccagggttcct 434
Query: 301 aggaattggtgcttccttttctcctcagcctcctgtgggcagggtgtgtatgtcagcaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aggaattggtgcttccttttctcctcagcctcctgtgggcagggtgtgtatgtcagcaaa 374
Query: 361 gggtgtgagcccttgtgattcgga-tctcagggactgggggcccggtaaggatcatcatg 419
|||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct: 373 gggtgtgagcccttgtgattcggattc-cagggactgggggcctggtaaggatcatcatg 315
Query: 420 cccctttcagcttgcctaacatgtgacttttacaaagttctcattaacgatcttgttgtg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cccctttcagcttgcctaacatgtgacttttacaaagttctcattaacgatcttgttgtg 255
Query: 480 gcccccctcctctgagacaacattgttcttcatattccattaattgctgcatat 533
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 254 gcccccctcctccgagacaacattgttcttcatattccattaattgctgtatat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 930
Length adjustment: 10
Effective length of query: 530
Effective length of database: 920
Effective search space: 487600
Effective search space used: 487600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
