BAC Information

Click to search

BAC

Clone NameMSMg01-079H20
Chromosome12 (Build37)
Map Location 31,147,993 - 31,148,490
singlet/doubletsinglet
Overlap genenone
Upstream geneMyt1l, LOC100043496, Pxdn, Tpo, Sntg2
Downstream geneTmem18, LOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079H20.T7 (MSMg01no079_h20.b1)MSMg01-079H20.TJ (MSMg01no079_h20.g1)
ACCAG300557AG300558
length717719
length of high quality
(start - end)
600 (38 - 637)509 (67 - 575)
definitionCHROMAT_FILE: MSMg01no079_h20.b1 PHD_FILE: MSMg01no079_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:08 2005CHROMAT_FILE: MSMg01no079_h20.g1 PHD_FILE: MSMg01no079_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTATACGACTCCTATAGTTCGAGAATCCGCGGAATTCTCT
CTCACTACTTCACTTGGGTTCCAGGAATCAAGCTCAGGTCAGCAAGGTGG
TGTTAGGTAATTTTTGTGTGTGTTGTTTTAATTCTTTCATATATTGCATC
CCAACTGTAGTTTCCCCTCCATCCTCTCCTCCCAAACCCACCCCAACCCC
AGCCCAATCCACTCCTCCTCCATGTCCTTCAGGAAAGGGCAGGCCTTCCA
GGGATATCAACCAAACCTAATGAGCCACCTCACTGGCTCACTCAAACCAG
ATATTTAAATTACTTAAATTTAAATAATTATTATTTAAATTTAAAATTAT
ATAAATTTAAATAATTTAATAATTTAAAATTATTTAAAGAGAAAATTTCA
TAGCAATAAATCTCTACATTAAAAGGAGAAAGACAATATAAGTGTCCTTA
AATAATGCTCCAAGGATATAACAAAACCTGAGGTTTATATAAAGAATAAA
GAAGAGAACAAGTAAGTAAAATAGAAATTATAAAATTCACAAGGAAAAAA
ATCAATAAATCTAAGAGTTGGTTTTTTTTTCATTTTCTTTGAAAATTAAA
TAAGCCTTTTGCTAGACTGAGAAAAACATGAGGGAGAGTCACACCCTGAG
TGAAAAGTACAGGTGTTTATTTTAGCCGCACAGGCGAGAGCGAGCCATGA
AGAGCCCCTGACAGAGT
TGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATCCTTTGAACAAAGCTCTCATCACAGAAAAACA
AAGCCCACCCCCACCCCCTGCCCCCGCAGCTTTGCTGCCTCCCTAGAAAC
TCCTCTGCAGAAACAGATCTAGGGATGGAGGATTGGAGGTGAATTTGCAA
ACCAACTTGAGCCTCATGAGTTCTGTTGAGGGCTATGGAAACTGGCCCCC
TGCTCTCTGGCTGAGTATGGAGCTGAGGCACCACAAATAGGCACCATTAG
GAATCCTCCAGCTGAGAAGGAGGAAAAGAAGTCTATTGAGCCCTGGCTAG
GTGGAAATCTGAGCAATTAAGTTACAGATGCTTATTCTGACCTGACTCAT
ACAGTCAGTCCTCCTATCAGTATTCAAACCAAGACCAACCATTACTGCTG
CCTCCTTGAACTTGATCTCCAATGTCATGTTTCCTGTTTTTAGTGAAGTG
ATCTGTCACAATCTGTTTTTATTATTATTATTATTATTATTATTATTATT
ATTATTATTATTATTATTATTATGCTTTCCCTTCCCCCTCCCCCCCCTGT
TCCCTCTTCCTTCGTTCTCCTCTTCCTTCCGATTCTCGTCTCCTTCACCA
CCACCCACCCCTCCCTTATCCTATCCCCTCTCCTCTCTCTCCTTCCGCCT
CCCCCCCTTCTACCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_h20.g1 MSMg01no079_h20.g1 CHROMAT_FILE:
MSMg01no079_h20.g1 PHD_FILE: MSMg01no079_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:08 2005
         (509 letters)



>mm_chr12_31147839_31148747
          Length = 909

 Score =  955 bits (494), Expect = 0.0
 Identities = 497/498 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcctttgaacaaagctctcatcacagaaaaacaaagcccacccccaccccctgcccccg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 atcctttgaacaaagctctcatcacagaaaaacaaagcccacccccaccccctgcccccg 593

                                                                       
Query: 61  cagctttgctgcctccctagaaactcctctgcagaaacagatctagggatggaggattgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 cagctttgctgcctccctagaaactcctctgcagaaacagatctagggatggaggattgg 533

                                                                       
Query: 121 aggtgaatttgcaaaccaacttgagcctcatgagttctgttgagggctatggaaactggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aggtgaatttgcaaaccaacttgagcctcatgagttctgttgagggctatggaaactggc 473

                                                                       
Query: 181 cccctgctctctggctgagtatggagctgaggcaccacaaataggcaccattaggaatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cccctgctctctggctgagtatggagctgaggcaccacaaataggcaccattaggaatcc 413

                                                                       
Query: 241 tccagctgagaaggaggaaaagaagtctattgagccctggctaggtggaaatctgagcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tccagctgagaaggaggaaaagaagtctattgagccctggctaggtggaaatctgagcaa 353

                                                                       
Query: 301 ttaagttacagatgcttattctgacctgactcatacagtcagtcctcctatcagtattca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttaagttacagatgcttattctgacctgactcatacagtcagtcctcctatcagtattca 293

                                                                       
Query: 361 aaccaagaccaaccattactgctgcctccttgaacttgatctccaatgtcatgtttcctg 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 292 aaccaagaccaaccattactgctgcctccttgaacttgatctccaatgccatgtttcctg 233

                                                                       
Query: 421 tttttagtgaagtgatctgtcacaatctgtttttattattattattattattattattat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tttttagtgaagtgatctgtcacaatctgtttttattattattattattattattattat 173

                             
Query: 481 tattattattattattat 498
           ||||||||||||||||||
Sbjct: 172 tattattattattattat 155


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)